structure analysis of vitamin D3 receptor
Kashiwagi, H., Ohta, M., Ono, Y., Itoh, S., Iijima, S., Sato, H., Takahashi, T.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Vitamin D3 receptor | 253 | Homo sapiens | Mutation(s): 0  Gene Names: VDR, NR1I1 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P11473 (Homo sapiens) Explore P11473  Go to UniProtKB:  P11473 | |||||
PHAROS:  P11473 GTEx:  ENSG00000111424  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P11473 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
DS5 Query on DS5 | B [auth A] | (4S)-4-hydroxy-5-[2-methyl-4-(3-{3-methyl-4-[4,4,4-trifluoro-3-hydroxy-3-(trifluoromethyl)but-1-yn-1-yl]phenyl}pentan-3-yl)phenoxy]pentanoic acid C29 H32 F6 O5 BMRRFNRRIWOMAT-QHCPKHFHSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 44.619 | α = 90 |
b = 51.803 | β = 90 |
c = 132.513 | γ = 90 |
Software Name | Purpose |
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MOSFLM | data reduction |
SCALA | data scaling |
BUSTER-TNT | refinement |
PDB_EXTRACT | data extraction |
BUSTER | refinement |