3VMY | pdb_00003vmy

Crystal Structure of a parallel coiled-coil dimerization domain from the voltage-gated proton channel (REDUCTION/DTT)

PDB DOI: https://doi.org/10.2210/pdb3VMY/pdb

Classification: MEMBRANE PROTEIN
Organism(s): Mus musculus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-12-19 Released: 2013-01-30
Deposition Author(s): Fujiwara, Y., Takeshita, K., Kobayashi, M., Okamura, Y., Nakagawa, A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.47 Å
R-Value Free:
0.234 (Depositor), 0.251 (DCC)
R-Value Work:
0.198 (Depositor), 0.217 (DCC)
R-Value Observed:
0.200 (Depositor)

Starting Model: experimental
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This is version 1.2 of the entry. See complete history.

Literature

Crystal Structure of a Parallel Coiled-Coil Dimerization Domain from the Voltage-Gated Proton Channel (Reduction/Dtt)

Fujiwara, Y., Takeshita, K., Kobayashi, M., Okamura, Y., Nakagawa, A.

To be published.

Macromolecule Content

Total Structure Weight: 23.71 kDa
Atom Count: 1,942
Modeled Residue Count: 191
Deposited Residue Count: 204
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Voltage-gated hydrogen channel 1	A, B [auth C], C [auth B], D	51	Mus musculus	Mutation(s): 0 Gene Names: Bts, Hvcn1, Vsop
UniProt
Find proteins for Q3U2S8 (Mus musculus) Explore Q3U2S8 Go to UniProtKB: Q3U2S8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q3U2S8
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.47 Å
R-Value Free: 0.234 (Depositor), 0.251 (DCC)
R-Value Work: 0.198 (Depositor), 0.217 (DCC)
R-Value Observed: 0.200 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 40.165	α = 90
b = 54.068	β = 90
c = 81.54	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling
REFMAC	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2013-01-30

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2013-01-30
Type: Initial release
Version 1.1: 2017-11-22
Changes: Refinement description
Version 1.2: 2023-11-08
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.