3UIV | pdb_00003uiv

Human serum albumin-myristate-amantadine hydrochloride complex

PDB DOI: https://doi.org/10.2210/pdb3UIV/pdb

Classification: LIPID BINDING PROTEIN
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2011-11-06 Released: 2012-11-07
Deposition Author(s): Yang, F., Ma, Z., Ma, L., Yang, G.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free:
0.290 (Depositor), 0.287 (DCC)
R-Value Work:
0.226 (Depositor), 0.223 (DCC)
R-Value Observed:
0.230 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.2 of the entry. See complete history.

Literature

Structural basis of the drug-binding specificity of human serum albumin

Curry, S.

To be published.

Macromolecule Content

Total Structure Weight: 136.26 kDa
Atom Count: 9,633
Modeled Residue Count: 1,164
Deposited Residue Count: 1,170
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Serum albumin	A, B [auth H]	585	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P02768 (Homo sapiens) Explore P02768 Go to UniProtKB: P02768
PHAROS: P02768 GTEx: ENSG00000163631
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P02768
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MYR Query on MYR Download:Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain E [auth A] SDF format, chain F [auth A] SDF format, chain G [auth A] SDF format, chain H [auth A] SDF format, chain J [auth H] SDF format, chain K [auth H] SDF format, chain O [auth H] SDF format, chain N [auth H] SDF format, chain M [auth H] SDF format, chain L [auth H] SDF format, chain I [auth H] SDF format, chain D [auth A] MOL2 format, chain C [auth A] MOL2 format, chain E [auth A] MOL2 format, chain F [auth A] MOL2 format, chain G [auth A] MOL2 format, chain H [auth A] MOL2 format, chain J [auth H] MOL2 format, chain K [auth H] MOL2 format, chain O [auth H] MOL2 format, chain N [auth H] MOL2 format, chain M [auth H] MOL2 format, chain L [auth H] MOL2 format, chain I [auth H] MOL2 format, chain D [auth A] mmCIF format, chain C [auth A] mmCIF format, chain E [auth A] mmCIF format, chain F [auth A] mmCIF format, chain G [auth A] mmCIF format, chain H [auth A] mmCIF format, chain J [auth H] mmCIF format, chain K [auth H] mmCIF format, chain O [auth H] mmCIF format, chain N [auth H] mmCIF format, chain M [auth H] mmCIF format, chain L [auth H] mmCIF format, chain I [auth H] mmCIF format, chain D [auth A]	C [auth A] D [auth A] E [auth A] F [auth A] G [auth A] C [auth A], D [auth A], E [auth A], F [auth A], G [auth A], H [auth A], I [auth H], J [auth H], K [auth H], L [auth H], M [auth H], N [auth H], O [auth H]	MYRISTIC ACID C₁₄ H₂₈ O₂ TUNFSRHWOTWDNC-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Focus chain D [auth A] Focus chain E [auth A] Focus chain F [auth A] Focus chain G [auth A] Focus chain H [auth A] Focus chain I [auth H] Focus chain J [auth H] Focus chain K [auth H] Focus chain L [auth H] Focus chain M [auth H] Focus chain N [auth H] Focus chain O [auth H] Interactions & Density Focus chain C [auth A] Focus chain D [auth A] Focus chain E [auth A] Focus chain F [auth A] Focus chain G [auth A] Focus chain H [auth A] Focus chain I [auth H] Focus chain J [auth H] Focus chain K [auth H] Focus chain L [auth H] Focus chain M [auth H] Focus chain N [auth H] Focus chain O [auth H]
308 Query on 308 Download:Ideal Coordinates CCD File SDF format, chain P [auth H] MOL2 format, chain P [auth H] mmCIF format, chain P [auth H]	P [auth H]	(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]decan-1-amine C₁₀ H₁₇ N DKNWSYNQZKUICI-CHIWXEEVSA-N		Interactions Focus chain P [auth H] Interactions & Density Focus chain P [auth H]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.290 (Depositor), 0.287 (DCC)
R-Value Work: 0.226 (Depositor), 0.223 (DCC)
R-Value Observed: 0.230 (Depositor)

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 38.27	α = 74.91
b = 93.516	β = 89.75
c = 96.217	γ = 80.04

Software Package:

Software Name	Purpose
CBASS	data collection
AMoRE	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	refinement

Structure Validation

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Ligand Structure Quality Assessment

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Entry History

Deposition Data

Released Date: 2012-11-07

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2012-11-07
Type: Initial release
Version 1.1: 2023-11-01
Changes: Data collection, Database references, Derived calculations, Refinement description
Version 1.2: 2024-10-30
Changes: Structure summary