3UAH | pdb_00003uah

Structure of the Shq1 specific domain from Saccharomyces cerevisiae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Free: 
    0.198 (Depositor), 0.198 (DCC) 
  • R-Value Work: 
    0.168 (Depositor), 0.167 (DCC) 
  • R-Value Observed: 
    0.170 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 3UAH

This is version 1.2 of the entry. See complete history

Literature

Structure of the Shq1-Cbf5-Nop10-Gar1 complex and implications for H/ACA RNP biogenesis and dyskeratosis congenita

Li, S.Duan, J.Li, D.Ma, S.Ye, K.

(2011) EMBO J 30: 5010-5020

  • DOI: https://doi.org/10.1038/emboj.2011.427
  • Primary Citation Related Structures: 
    3UAH, 3UAI

  • PubMed Abstract: 

    Shq1 is a conserved protein required for the biogenesis of eukaryotic H/ACA ribonucleoproteins (RNPs), including human telomerase. We report the structure of the Shq1-specific domain alone and in complex with H/ACA RNP proteins Cbf5, Nop10 and Gar1. The Shq1-specific domain adopts a novel helical fold and primarily contacts the PUA domain and the otherwise disordered C-terminal extension (CTE) of Cbf5. The structure shows that dyskeratosis congenita mutations found in the CTE of human Cbf5 likely interfere with Shq1 binding. However, most mutations in the PUA domain are not located at the Shq1-binding surface and also have little effect on the yeast Cbf5-Shq1 interaction. Shq1 binds Cbf5 independently of the H/ACA RNP proteins Nop10, Gar1 and Nhp2 and the assembly factor Naf1, but shares an overlapping binding surface with H/ACA RNA. Shq1 point mutations that disrupt Cbf5 interaction suppress yeast growth particularly at elevated temperatures. Our results suggest that Shq1 functions as an assembly chaperone that protects the Cbf5 protein complexes from non-specific RNA binding and aggregation before assembly of H/ACA RNA.


  • Organizational Affiliation
    • Department of Biochemistry and Molecular Biology, College of Life Sciences, Beijing Normal University, Beijing, China.

Macromolecule Content 

  • Total Structure Weight: 42.93 kDa 
  • Atom Count: 2,929 
  • Modeled Residue Count: 312 
  • Deposited Residue Count: 366 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Protein SHQ1366Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: SHQ1
UniProt
Find proteins for P40486 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P40486 
Go to UniProtKB:  P40486
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP40486
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Free:  0.198 (Depositor), 0.198 (DCC) 
  • R-Value Work:  0.168 (Depositor), 0.167 (DCC) 
  • R-Value Observed: 0.170 (Depositor) 
Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 39.087α = 102.19
b = 50.126β = 93.75
c = 53.951γ = 97.97
Software Package:
Software NamePurpose
SHARPphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Released Date: 2011-12-14 
  • Deposition Author(s): Ye, K.

Revision History  (Full details and data files)

  • Version 1.0: 2011-12-14
    Type: Initial release
  • Version 1.1: 2013-06-26
    Changes: Database references
  • Version 1.2: 2024-03-20
    Changes: Data collection, Database references