3U4T | pdb_00003u4t

Crystal Structure of the C-terminal part of the TPR repeat-containing protein Q11TI6_CYTH3 from Cytophaga hutchinsonii. Northeast Structural Genomics Consortium Target ChR11B.

PDB DOI: https://doi.org/10.2210/pdb3U4T/pdb

Classification: Structural Genomics, Unknown Function
Organism(s): Cytophaga hutchinsonii ATCC 33406
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2011-10-10 Released: 2011-10-19
Deposition Author(s): Vorobiev, S., Neely, H., Chen, Y., Seetharaman, J., Patel, P., Xiao, R., Ciccosanti, C., Maglaqui, M., Everett, J.K., Nair, R., Acton, T.B., Rost, B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.28 Å
R-Value Free:
0.256 (Depositor), 0.253 (DCC)
R-Value Work:
0.238 (Depositor), 0.234 (DCC)
R-Value Observed:
0.239 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of the C-terminal part of the TPR repeat-containing protein Q11TI6_CYTH3 from Cytophaga hutchinsonii.

Vorobiev, S., Neely, H., Chen, Y., Seetharaman, J., Patel, P., Xiao, R., Ciccosanti, C., Maglaqui, M., Everett, J.K., Nair, R., Acton, T.B., Rost, B., Montelione, G.T., Tong, L., Hunt, J.F.

To be published.

Macromolecule Content

Total Structure Weight: 64.28 kDa
Atom Count: 4,366
Modeled Residue Count: 516
Deposited Residue Count: 544
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
TPR repeat-containing protein	A, B	272	Cytophaga hutchinsonii ATCC 33406	Mutation(s): 1 Gene Names: CHU_2012
UniProt
Find proteins for A0A6N4SSE9 (Cytophaga hutchinsonii (strain ATCC 33406 / DSM 1761 / CIP 103989 / NBRC 15051 / NCIMB 9469 / D465)) Explore A0A6N4SSE9 Go to UniProtKB: A0A6N4SSE9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A6N4SSE9
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Modified Residue	Modification Type	Formula	2D Diagram
MSE Query on MSE	A, B	MET	Selenomethionine	C₅ H₁₁ N O₂ Se

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.28 Å
R-Value Free: 0.256 (Depositor), 0.253 (DCC)
R-Value Work: 0.238 (Depositor), 0.234 (DCC)
R-Value Observed: 0.239 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 84.671	α = 90
b = 42.822	β = 92.83
c = 104.946	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
ADSC	data collection
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2011-10-19

Deposition Author(s):

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2011-10-19
Type: Initial release
Version 1.1: 2024-11-06
Changes: Data collection, Database references, Derived calculations, Structure summary