3U04

Crystal structure of peptide deformylase from ehrlichia chaffeensis in complex with actinonin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free: 0.198 
  • R-Value Work: 0.170 
  • R-Value Observed: 0.172 

Starting Model: experimental
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Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

Crystal structure of peptide deformylase from ehrlichia chaffeensis in complex with actinonin

Seattle Structural Genomics Center for Infectious Disease (SSGCID)Abendroth, J.Clifton, M.C.Edwards, T.E.Staker, B.L.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Peptide deformylase 1190Ehrlichia chaffeensis str. ArkansasMutation(s): 0 
Gene Names: defdef1ECH_0073
EC: 3.5.1.88
UniProt
Find proteins for Q2GI30 (Ehrlichia chaffeensis (strain ATCC CRL-10679 / Arkansas))
Explore Q2GI30 
Go to UniProtKB:  Q2GI30
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ2GI30
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 83.89α = 90
b = 33.02β = 91.17
c = 68.14γ = 90
Software Package:
Software NamePurpose
XDSdata scaling
PHASERphasing
REFMACrefinement

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2011-10-12
    Type: Initial release
  • Version 1.1: 2018-01-24
    Changes: Database references
  • Version 1.2: 2023-09-13
    Changes: Data collection, Database references, Derived calculations, Refinement description