Crystal structure of a putative racemase from Roseobacter denitrificans
Eswaramoorthy, S., Almo, S.C., Swaminathan, S.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Racemase, putative | 388 | Roseobacter denitrificans OCh 114 | Mutation(s): 0  Gene Names: RD1_3860 | ![]() | |
UniProt | |||||
Find proteins for Q161M1 (Roseobacter denitrificans (strain ATCC 33942 / OCh 114)) Explore Q161M1  Go to UniProtKB:  Q161M1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q161M1 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PG4 Query on PG4 | H [auth A], N [auth B] | TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N | |||
GOL Query on GOL | G [auth A], M [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
DAL Query on DAL | F [auth A], L [auth B] | D-ALANINE C3 H7 N O2 QNAYBMKLOCPYGJ-UWTATZPHSA-N | |||
CL Query on CL | C [auth A], I [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | |||
MG Query on MG | D [auth A], E [auth A], J [auth B], K [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 182.492 | α = 90 |
b = 64.745 | β = 90 |
c = 76.449 | γ = 90 |
Software Name | Purpose |
---|---|
CBASS | data collection |
MOLREP | phasing |
CNS | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |