Protease Inhibitors that protrude out from substrate envelope are more susceptible to developing drug resistance
Altman, M.D., Nalam, M.N.L., Ali, A., Cao, H., Rana, T.M., Schiffer, C.A., Tidor, B.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Protease | 99 | Human immunodeficiency virus 1 | Mutation(s): 1  Gene Names: gag-pol, pol | ||
UniProt | |||||
Find proteins for O38732 (Human immunodeficiency virus 1) Explore O38732  Go to UniProtKB:  O38732 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O38732 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
F71 Query on F71 | E [auth B] | 3-hydroxy-N-[(2S,3R)-3-hydroxy-4-([(2S)-2-methylbutyl]{[5-(1,2-oxazol-5-yl)thiophen-2-yl]sulfonyl}amino)-1-phenylbutan-2-yl]benzamide C29 H33 N3 O6 S2 NZSGTDKPVPLULN-KSNOWIBYSA-N | |||
PO4 Query on PO4 | C [auth A], D [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |
Entity ID: 3 | |||||
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ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_000949 (F71) Query on PRD_000949 | E [auth B] | 3-HYDROXY-N-[(2S,3R)-3-HYDROXY-4-([(2S)-2-METHYLBUTYL]{[5-(1,2-OXAZOL-5-YL)THIOPHEN-2-YL]SULFONYL}AMINO)-1-PHENYLBUTAN-2-YL]BENZAMIDE | Peptide-like / Inhibitor |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 50.772 | α = 90 |
b = 58.377 | β = 90 |
c = 61.742 | γ = 90 |
Software Name | Purpose |
---|---|
DENZO | data reduction |
SCALEPACK | data scaling |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
HKL-2000 | data reduction |
AMoRE | phasing |