3RUY | pdb_00003ruy

Crystal Structure of the Ornithine-oxo acid transaminase RocD from Bacillus anthracis

• PDB DOI: https://doi.org/10.2210/pdb3RUY/pdb

• Classification: TRANSFERASE
• Organism(s): Bacillus anthracis str. 'Ames Ancestor
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2011-05-05 Released: 2011-05-18 
• Deposition Author(s): Anderson, S.M., Wawrzak, Z., Brunzelle, J.S., Onopriyenko, O., Peterson, S.N., Anderson, W.F., Savchenko, A., Center for Structural Genomics of Infectious Diseases (CSGID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.65 Å
• R-Value Free: 
  0.232 (Depositor), 0.228 (DCC) 
• R-Value Work: 
  0.196 (Depositor), 0.196 (DCC) 
• R-Value Observed: 
  0.198 (Depositor) 

Literature

Crystal Structure of the Ornithine-oxo acid transaminase RocD from Bacillus anthracis

Anderson, S.M., Wawrzak, Z., Brunzelle, J.S., Onopriyenko, O., Peterson, S.N., Anderson, W.F., Savchenko, A., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 86.14 kDa 
• Atom Count: 6,089 
• Modeled Residue Count: 784 
• Deposited Residue Count: 784 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ornithine aminotransferase	A, B	392	Bacillus anthracis str. 'Ames Ancestor	Mutation(s): 0  Gene Names: rocD, BA_1154, GBAA_1154, BAS1071 EC: 2.6.1.13
UniProt
Find proteins for Q81TV3 (Bacillus anthracis) Explore Q81TV3  Go to UniProtKB:  Q81TV3

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
LLP	A, B	L-PEPTIDE LINKING	C14 H22 N3 O7 P		LYS

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.65 Å
• R-Value Free:  0.232 (Depositor), 0.228 (DCC) 
• R-Value Work:  0.196 (Depositor), 0.196 (DCC) 
• R-Value Observed: 0.198 (Depositor) 

Diffraction Data: https://doi.org/10.18430/m33ruy

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 70.12	α = 90
b = 98.291	β = 90
c = 126.783	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
BLU-MAX	data collection
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-05-18 
Deposition Author(s): Anderson, S.M., Wawrzak, Z., Brunzelle, J.S., Onopriyenko, O., Peterson, S.N., Anderson, W.F., Savchenko, A., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History  

• Version 1.0: 2011-05-18
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2025-03-26
  Changes: Data collection, Database references, Derived calculations, Structure summary