3RNV | pdb_00003rnv

Structure of the autocatalytic cysteine protease domain of potyvirus helper-component proteinase

PDB DOI: https://doi.org/10.2210/pdb3RNV/pdb

Classification: HYDROLASE
Organism(s): Turnip mosaic virus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-04-22 Released: 2011-05-04
Deposition Author(s): Ye, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.274 (Depositor), 0.265 (DCC)
R-Value Work:
0.246 (Depositor), 0.243 (DCC)
R-Value Observed:
0.248 (Depositor)

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This is version 1.2 of the entry. See complete history.

Literature

Structure of the autocatalytic cysteine protease domain of potyvirus helper-component proteinase

Guo, B., Lin, J., Ye, K.

To be published.

Macromolecule Content

Total Structure Weight: 18.05 kDa
Atom Count: 1,008
Modeled Residue Count: 123
Deposited Residue Count: 158
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Helper component proteinase	A	158	Turnip mosaic virus	Mutation(s): 0 Gene Names: HC-Pro EC: 3.4.22.45
UniProt
Find proteins for P89509 (Turnip mosaic virus (strain Japanese)) Explore P89509 Go to UniProtKB: P89509
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P89509
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.274 (Depositor), 0.265 (DCC)
R-Value Work: 0.246 (Depositor), 0.243 (DCC)
R-Value Observed: 0.248 (Depositor)

Space Group: I 4 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 98.806	α = 90
b = 98.806	β = 90
c = 65.747	γ = 90

Software Package:

Software Name	Purpose
SHARP	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2011-05-04

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-05-04
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2024-03-20
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.