3RLS

Crystal structure of yeast AF-9 homolog protein Yaf9

• PDB DOI: https://doi.org/10.2210/pdb3RLS/pdb

• Classification: TRANSCRIPTION
• Organism(s): Saccharomyces cerevisiae
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2011-04-20 Released: 2011-05-25 
• Deposition Author(s): Chen, S.D., Wu, L.J., Liu, Y.F.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 0.202 
• R-Value Work: 0.158 
• R-Value Observed: 0.160 

Starting Model: experimental

Literature

Crystal structure of yeast AF-9 homolog protein yaf9

Liu, Y.F.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 40.45 kDa 
• Atom Count: 2,860 
• Modelled Residue Count: 296 
• Deposited Residue Count: 350 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein AF-9 homolog	A, B	175	Saccharomyces cerevisiae	Mutation(s): 0  Gene Names: YAF9
UniProt
Find proteins for P53930 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P53930  Go to UniProtKB:  P53930

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 0.202 
• R-Value Work: 0.158 
• R-Value Observed: 0.160 
• Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 32.643	α = 71.78
b = 44.267	β = 89.86
c = 62.158	γ = 83.31

Software Package:

Software Name	Purpose
PHASER	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-05-25 
Deposition Author(s): Chen, S.D., Wu, L.J., Liu, Y.F.

Revision History  

• Version 1.0: 2011-05-25
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2023-11-01
  Changes: Data collection, Database references, Refinement description