3RJP | pdb_00003rjp

Crystal structure of the DNA binding domain of CovR from Streptococcus pyogenes

PDB DOI: https://doi.org/10.2210/pdb3RJP/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Streptococcus pyogenes
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2011-04-15 Released: 2012-04-25
Deposition Author(s): Horstmann, N.M., Brennan, R.G., Shelburne, S.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free:
0.219 (Depositor), 0.230 (DCC)
R-Value Work:
0.201 (Depositor), 0.217 (DCC)
R-Value Observed:
0.201 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 3RJP

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of the DNA binding domain of CovR from Streptococcus pyogenes

Horstmann, N., Kumaraswami, M., Musser, J.M., Brennan, R.G., Shelburne, S.A.

To be published.

Macromolecule Content

Total Structure Weight: 11.43 kDa
Atom Count: 907
Modeled Residue Count: 96
Deposited Residue Count: 96
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CovR	A	96	Streptococcus pyogenes	Mutation(s): 0 Gene Names: covR, csrR
UniProt
Find proteins for O87527 (Streptococcus pyogenes) Explore O87527 Go to UniProtKB: O87527
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O87527
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free: 0.219 (Depositor), 0.230 (DCC)
R-Value Work: 0.201 (Depositor), 0.217 (DCC)
R-Value Observed: 0.201 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 30.467	α = 90
b = 36.686	β = 94.6
c = 38.937	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
SOLVE	phasing
CNS	refinement
MOSFLM	data reduction
SCALA	data scaling

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2012-04-25

Deposition Author(s):

Horstmann, N.M.

Shelburne, S.A.

Revision History (Full details and data files)

Version 1.0: 2012-04-25
Type: Initial release
Version 1.1: 2024-02-28
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.