3RH9 | pdb_00003rh9

The crystal structure of oxidoreductase from Marinobacter aquaeolei

PDB DOI: https://doi.org/10.2210/pdb3RH9/pdb

Classification: OXIDOREDUCTASE
Organism(s): Marinobacter nauticus VT8
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2011-04-11 Released: 2011-05-04
Deposition Author(s): Zhang, Z., Almo, S.C., Swaminathan, S., New York Structural Genomics Research Consortium (NYSGRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.63 Å
R-Value Free:
0.252 (Depositor), 0.191 (DCC)
R-Value Work:
0.187 (Depositor), 0.189 (DCC)
R-Value Observed:
0.191 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 3RH9

This is version 1.2 of the entry. See complete history.

Literature

The crystal structure of oxidoreductase from Marinobacter aquaeolei

Zhang, Z., Almo, S.C., Swaminathan, S.

To be published.

Macromolecule Content

Total Structure Weight: 111.59 kDa
Atom Count: 7,507
Modeled Residue Count: 957
Deposited Residue Count: 1,012
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Succinate-semialdehyde dehydrogenase (NAD(P)(+))	A, B	506	Marinobacter nauticus VT8	Mutation(s): 0 Gene Names: Maqu_3647 EC: 1.2.1.16
UniProt
Find proteins for A1U6U7 (Marinobacter nauticus (strain ATCC 700491 / DSM 11845 / VT8)) Explore A1U6U7 Go to UniProtKB: A1U6U7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A1U6U7
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.63 Å
R-Value Free: 0.252 (Depositor), 0.191 (DCC)
R-Value Work: 0.187 (Depositor), 0.189 (DCC)
R-Value Observed: 0.191 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 67.483	α = 90
b = 102.477	β = 90
c = 144.498	γ = 90

Software Package:

Software Name	Purpose
CBASS	data collection
SOLVE	phasing
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2011-05-04

Deposition Author(s):

Swaminathan, S.

New York Structural Genomics Research Consortium (NYSGRC)

Revision History (Full details and data files)

Version 1.0: 2011-05-04
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2024-10-30
Changes: Data collection, Database references, Derived calculations, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.