3QWE | pdb_00003qwe

Crystal structure of the N-terminal domain of the GEM interacting protein

• PDB DOI: https://doi.org/10.2210/pdb3QWE/pdb

• Classification: PROTEIN BINDING
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21
• Mutation(s): No 


• Deposited: 2011-02-28 Released: 2011-03-23 
• Deposition Author(s): Guan, X., Tempel, W., Tong, Y., Shen, L., Wang, H., Wernimont, A.K., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Park, H., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 
  0.231 (Depositor), 0.260 (DCC) 
• R-Value Work: 
  0.227 (Depositor), 0.257 (DCC) 
• R-Value Observed: 
  0.227 (Depositor) 

Literature

Crystal structure of the N-terminal domain of the GEM interacting protein

Guan, X., Tempel, W., Tong, Y., Shen, L., Wang, H., Wernimont, A.K., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Park, H.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 32.18 kDa 
• Atom Count: 2,047 
• Modeled Residue Count: 260 
• Deposited Residue Count: 279 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
GEM-interacting protein	A	279	Homo sapiens	Mutation(s): 0  Gene Names: GMIP
UniProt & NIH Common Fund Data Resources
Find proteins for Q9P107 (Homo sapiens) Explore Q9P107  Go to UniProtKB:  Q9P107
PHAROS:  Q9P107 GTEx:  ENSG00000089639

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
UNX	AA [auth A], B [auth A], BA [auth A], C [auth A], CA [auth A], D [auth A], DA [auth A], E [auth A], F [auth A], G [auth A], H [auth A], I [auth A], J [auth A], K [auth A], L [auth A], M [auth A], N [auth A], O [auth A], P [auth A], Q [auth A], R [auth A], S [auth A], T [auth A], U [auth A], V [auth A], W [auth A], X [auth A], Y [auth A], Z [auth A]	UNKNOWN ATOM OR ION X

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free:  0.231 (Depositor), 0.260 (DCC) 
• R-Value Work:  0.227 (Depositor), 0.257 (DCC) 
• R-Value Observed: 0.227 (Depositor) 

Space Group: P 6₅ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 57.53	α = 90
b = 57.53	β = 90
c = 500.73	γ = 120

Software Package:

Software Name	Purpose
XSCALE	data processing
BUSTER-TNT	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
DENZO	data reduction
XSCALE	data scaling
SCALEPACK	data scaling
SHELXDE	phasing
BUSTER	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-03-23 
Deposition Author(s): Guan, X., Tempel, W., Tong, Y., Shen, L., Wang, H., Wernimont, A.K., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Park, H., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2011-03-23
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2024-02-21
  Changes: Data collection, Database references