Crystal structure of a Putative amino-acid aminotransferase (NP_104211.1) from Mesorhizobium loti at 2.30 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Mlr3007 protein | 221 | Mesorhizobium loti | Mutation(s): 0  Gene Names: mlr3007 | ||
UniProt | |||||
Find proteins for Q98H69 (Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099)) Explore Q98H69  Go to UniProtKB:  Q98H69 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q98H69 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
IOD Query on IOD | AA [auth B] AC [auth F] BA [auth B] BC [auth F] EC [auth G] | IODIDE ION I XMBWDFGMSWQBCA-UHFFFAOYSA-M | |||
PEG Query on PEG | CA [auth B] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
EDO Query on EDO | AB [auth D] BB [auth D] CB [auth D] CC [auth F] DA [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
CL Query on CL | HC [auth G] L [auth A] M [auth A] N [auth A] NB [auth E] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Modified Residues 2 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
LLP Query on LLP | A, B, C, D, E A, B, C, D, E, F, G, H | L-PEPTIDE LINKING | C14 H22 N3 O7 P | LYS | |
MSE Query on MSE | A, B, C, D, E A, B, C, D, E, F, G, H | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 116.178 | α = 90 |
b = 215.574 | β = 90 |
c = 81.875 | γ = 90 |
Software Name | Purpose |
---|---|
MolProbity | model building |
PDB_EXTRACT | data extraction |
SHELXD | phasing |
autoSHARP | phasing |
XSCALE | data scaling |
REFMAC | refinement |
XDS | data reduction |