3Q9S

Crystal structure of rra(1-215) from Deinococcus Radiodurans

PDB DOI: https://doi.org/10.2210/pdb3Q9S/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Deinococcus radiodurans
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-01-09 Released: 2012-01-11
Deposition Author(s): Liu, Y., Gao, Z.Q., Dong, Y.H., Ji, C.N.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.263
R-Value Work: 0.207
R-Value Observed: 0.210

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of rra(1-215) from Deinococcus Radiodurans

Liu, Y., Gao, Z.Q., Dong, Y.H., Ji, C.N.

To be published.

Macromolecule Content

Total Structure Weight: 28.47 kDa
Atom Count: 1,733
Modelled Residue Count: 210
Deposited Residue Count: 249
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA-binding response regulator	A	249	Deinococcus radiodurans	Mutation(s): 0 Gene Names: DR_2418
UniProt
Find proteins for Q9RRR8 (Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)) Explore Q9RRR8 Go to UniProtKB: Q9RRR8
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9RRR8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.263
R-Value Work: 0.207
R-Value Observed: 0.210
Space Group: P 6₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 98.542	α = 90
b = 98.542	β = 90
c = 54.447	γ = 120

Software Package:

Software Name	Purpose
HKL-2000	data collection
SOLVE	phasing
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2012-01-11

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2012-01-11
Type: Initial release
Version 1.1: 2024-10-16
Changes: Data collection, Database references, Derived calculations, Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.