3Q9S | pdb_00003q9s

Crystal structure of rra(1-215) from Deinococcus Radiodurans

PDB DOI: https://doi.org/10.2210/pdb3Q9S/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Deinococcus radiodurans
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-01-09 Released: 2012-01-11
Deposition Author(s): Liu, Y., Gao, Z.Q., Dong, Y.H., Ji, C.N.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free:
0.263 (Depositor), 0.256 (DCC)
R-Value Work:
0.207 (Depositor), 0.203 (DCC)
R-Value Observed:
0.210 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 3Q9S

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of rra(1-215) from Deinococcus Radiodurans

Liu, Y., Gao, Z.Q., Dong, Y.H., Ji, C.N.

To be published.

Macromolecule Content

Total Structure Weight: 28.47 kDa
Atom Count: 1,733
Modeled Residue Count: 210
Deposited Residue Count: 249
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA-binding response regulator	A	249	Deinococcus radiodurans	Mutation(s): 0 Gene Names: DR_2418
UniProt
Find proteins for Q9RRR8 (Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)) Explore Q9RRR8 Go to UniProtKB: Q9RRR8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9RRR8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.263 (Depositor), 0.256 (DCC)
R-Value Work: 0.207 (Depositor), 0.203 (DCC)
R-Value Observed: 0.210 (Depositor)

Space Group: P 6₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 98.542	α = 90
b = 98.542	β = 90
c = 54.447	γ = 120

Software Package:

Software Name	Purpose
HKL-2000	data collection
SOLVE	phasing
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2012-01-11

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2012-01-11
Type: Initial release
Version 1.1: 2024-10-16
Changes: Data collection, Database references, Derived calculations, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.