3PTH | pdb_00003pth

The PABC1 MLLE domain bound to the variant PAM2 motif of LARP4B

PDB DOI: https://doi.org/10.2210/pdb3PTH/pdb

Classification: RNA BINDING PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2010-12-03 Released: 2011-12-21
Deposition Author(s): Grimm, C., Pelz, J.P.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free:
0.218 (Depositor), 0.216 (DCC)
R-Value Work:
0.172 (Depositor), 0.173 (DCC)
R-Value Observed:
0.173 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 3PTH

This is version 1.1 of the entry. See complete history.

Literature

LARP4B binds to the PABC1 MLLE domain via a variant PAM2 motif

Grimm, C., Pelz, J.P.

To be published.

Macromolecule Content

Total Structure Weight: 10.58 kDa
Atom Count: 769
Modeled Residue Count: 90
Deposited Residue Count: 97
Unique protein chains: 2

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Polyadenylate-binding protein 1	A	82	Homo sapiens	Mutation(s): 0 Gene Names: PABPC1, PAB1, PABP1, PABPC2
UniProt & NIH Common Fund Data Resources
Find proteins for P11940 (Homo sapiens) Explore P11940 Go to UniProtKB: P11940
PHAROS: P11940 GTEx: ENSG00000070756
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P11940
Sequence Annotations Expand
Reference Sequence

Find similar proteins by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
La-related protein 4B	B	15	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q92615 (Homo sapiens) Explore Q92615 Go to UniProtKB: Q92615
PHAROS: Q92615 GTEx: ENSG00000107929
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q92615
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.218 (Depositor), 0.216 (DCC)
R-Value Work: 0.172 (Depositor), 0.173 (DCC)
R-Value Observed: 0.173 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 29.15	α = 90
b = 57.194	β = 90
c = 59.514	γ = 90

Software Package:

Software Name	Purpose
DNA	data collection
PHASER	phasing
REFMAC	refinement
XDS	data reduction
XDS	data scaling

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2011-12-21

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-12-21
Type: Initial release
Version 1.1: 2024-02-21
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.