The catalytic domain of human OTUD5
Walker, J.R., Asinas, A.E., Crombet, L., Dong, A., Weigelt, J., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Dhe-Paganon, S., Structural Genomics Consortium (SGC)To be published.
Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
OTU domain-containing protein 5 | 185 | Homo sapiens | Mutation(s): 0 Gene Names: OTUD5 EC: 3.4.19.12 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q96G74 (Homo sapiens) Explore Q96G74 Go to UniProtKB: Q96G74 | |||||
PHAROS: Q96G74 GTEx: ENSG00000068308 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q96G74 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PG4 Query on PG4 | D [auth A] | TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N | |||
PEG Query on PEG | B [auth A], C [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
SO4 Query on SO4 | E [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
UNX Query on UNX | F [auth A] | UNKNOWN ATOM OR ION X |
Modified Residues 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 80.605 | α = 90 |
b = 80.605 | β = 90 |
c = 52.263 | γ = 90 |
Software Name | Purpose |
---|---|
HKL-2000 | data collection |
SHELX | model building |
REFMAC | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
SHELX | phasing |