3PF6 | pdb_00003pf6

The structure of uncharacterized protein PP-LUZ7_gp033 from Pseudomonas phage LUZ7.

• PDB DOI: https://doi.org/10.2210/pdb3PF6/pdb

• Classification: structural genomics, unknown function
• Organism(s): Pseudomonas phage LUZ7
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2010-10-28 Released: 2010-11-10 
• Deposition Author(s): Cuff, M.E., Evdokimova, E., Liu, F., Edwards, A., Savchenko, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.60 Å
• R-Value Free: 
  0.165 (Depositor), 0.185 (DCC) 
• R-Value Work: 
  0.135 (Depositor), 0.157 (DCC) 
• R-Value Observed: 
  0.136 (Depositor) 

Literature

The structure of uncharacterized protein PP-LUZ7_gp033 from Pseudomonas phage LUZ7.

Cuff, M.E., Evdokimova, E., Liu, F., Edwards, A., Savchenko, A., Joachimiak, A.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 28.8 kDa 
• Atom Count: 2,251 
• Modeled Residue Count: 230 
• Deposited Residue Count: 248 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
hypothetical protein PP-LUZ7_gp033	A, B, C, D	62	Pseudomonas phage LUZ7	Mutation(s): 0  Gene Names: PP-LUZ7_gp033
UniProt
Find proteins for C8ZKC7 (Pseudomonas phage LUZ7) Explore C8ZKC7  Go to UniProtKB:  C8ZKC7

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CL	E [auth B], F [auth C], G [auth C], H [auth D], I [auth D]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M

Modified Residues  1 Unique
ID	Chains	Modified Residue	Modification Type	Formula	2D Diagram
MSE	A, B, C, D	MET	Selenomethionine	C5 H11 N O2 Se

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.60 Å
• R-Value Free:  0.165 (Depositor), 0.185 (DCC) 
• R-Value Work:  0.135 (Depositor), 0.157 (DCC) 
• R-Value Observed: 0.136 (Depositor) 

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 31.886	α = 70.14
b = 40.822	β = 84.61
c = 46.268	γ = 83.86

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
MLPHARE	phasing
DM	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
SBC-Collect	data collection
HKL-3000	data reduction
HKL-3000	data scaling
HKL-3000	phasing
SHELXD	phasing
SHELXE	model building
SOLVE	phasing
RESOLVE	phasing
ARP/wARP	model building
CCP4	phasing
O	model building
Coot	model building

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-11-10 
Deposition Author(s): Cuff, M.E., Evdokimova, E., Liu, F., Edwards, A., Savchenko, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2010-11-10
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2017-11-08
  Changes: Refinement description
• Version 1.3: 2024-11-20
  Changes: Data collection, Database references, Derived calculations, Structure summary