3OZO | pdb_00003ozo

Crystal Structure of insect beta-N-acetyl-D-hexosaminidase OfHex1 complexed with NGT

PDB DOI: https://doi.org/10.2210/pdb3OZO/pdb

Classification: HYDROLASE/HYDROLASE INHIBITOR
Organism(s): Ostrinia furnacalis
Expression System: Komagataella pastoris
Mutation(s): No

Deposited: 2010-09-27 Released: 2011-09-28
Deposition Author(s): Zhang, H., Liu, T., Liu, F., Shen, X., Yang, Q.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Work:
0.205 (Depositor), 0.204 (DCC)
R-Value Observed:
0.205 (Depositor)

Starting Model: experimental
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Ligand Structure Quality Assessment

This is version 1.2 of the entry. See complete history.

Literature

Crystal Structure of insect beta-N-acetyl-D-hexosaminidase OfHex1 complexed with NGT

Zhang, H., Liu, T., Liu, F., Shen, X., Yang, Q.

To be published.

Macromolecule Content

Total Structure Weight: 65.77 kDa
Atom Count: 5,257
Modeled Residue Count: 572
Deposited Residue Count: 572
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
N-acetylglucosaminidase	A	572	Ostrinia furnacalis	Mutation(s): 0 EC: 3.2.1.52
UniProt
Find proteins for Q06GJ0 (Ostrinia furnacalis) Explore Q06GJ0 Go to UniProtKB: Q06GJ0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q06GJ0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NGT Query on NGT Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2-METHYL-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D]THIAZOLE-6,7-DIOL C₈ H₁₃ N O₄ S DRHXTSWSUAJOJZ-FMDGEEDCSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Work: 0.205 (Depositor), 0.204 (DCC)
R-Value Observed: 0.205 (Depositor)

Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 108.04	α = 90
b = 108.04	β = 90
c = 175	γ = 120

Software Package:

Software Name	Purpose
HKL-2000	data collection
AMoRE	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

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Ligand Structure Quality Assessment

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Entry History

Deposition Data

Released Date: 2011-09-28

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-09-28
Type: Initial release
Version 1.1: 2023-11-01
Changes: Data collection, Database references, Derived calculations, Refinement description
Version 1.2: 2024-11-20
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.