3OKZ | pdb_00003okz

Crystal Structure of protein gbs0355 from Streptococcus agalactiae, Northeast Structural Genomics Consortium Target SaR127

PDB DOI: https://doi.org/10.2210/pdb3OKZ/pdb

Classification: structural genomics, unknown function
Organism(s): Streptococcus agalactiae
Mutation(s): No

Deposited: 2010-08-25 Released: 2010-09-22
Deposition Author(s): Kuzin, A., Lew, S., Vorobiev, S.M., Seetharaman, J., Janjua, J., Xiao, R., Ciccosanti, C., Wang, D., Everett, J.K., Nair, R., Acton, T.B., Rost, B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free:
0.246 (Depositor), 0.253 (DCC)
R-Value Work:
0.204 (Depositor), 0.218 (DCC)
R-Value Observed:
0.204 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

Northeast Structural Genomics Consortium Target SaR127

Kuzin, A., Lew, S., Vorobiev, S.M., Seetharaman, J., Janjua, J., Xiao, R., Ciccosanti, C., Wang, D., Everett, J.K., Nair, R., Acton, T.B., Rost, B., Montelione, G.T., Hunt, J.F., Tong, L.

To be published.

Macromolecule Content

Total Structure Weight: 69.55 kDa
Atom Count: 4,695
Modeled Residue Count: 592
Deposited Residue Count: 612
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative uncharacterized protein gbs0355	A, B	306	Streptococcus agalactiae	Mutation(s): 0 Gene Names: gbs0355
UniProt
Find proteins for Q8E703 (Streptococcus agalactiae serotype III (strain NEM316)) Explore Q8E703 Go to UniProtKB: Q8E703
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8E703
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free: 0.246 (Depositor), 0.253 (DCC)
R-Value Work: 0.204 (Depositor), 0.218 (DCC)
R-Value Observed: 0.204 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 99.049	α = 90
b = 41.392	β = 103.44
c = 161.506	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
PDB_EXTRACT	data extraction
ADSC	data collection
DENZO	data reduction
SCALEPACK	data scaling
PHENIX	phasing
REFMAC	refinement

Structure Validation

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Entry History

Deposition Data

Released Date: 2010-09-22

Deposition Author(s):

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2010-09-22
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2012-02-22
Changes: Structure summary
Version 1.3: 2019-07-17
Changes: Data collection, Derived calculations, Refinement description
Version 1.4: 2024-11-27
Changes: Data collection, Database references, Structure summary