3OK4 | pdb_00003ok4

Crystal structure of the ANA:RNA decamer suffering from lattice translocation defects

• PDB DOI: https://doi.org/10.2210/pdb3OK4/pdb
• NAKB: 3OK4

• Classification: RNA
• Mutation(s): No 


• Deposited: 2010-08-24 Released: 2011-11-30 
• Deposition Author(s): Ovaere, M., Van Meervelt, L.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.15 Å
• R-Value Free: 
  0.253 (Depositor), 0.250 (DCC) 
• R-Value Work: 
  0.221 (Depositor), 0.220 (DCC) 
• R-Value Observed: 
  0.223 (Depositor) 

Literature

Crystal structure of the ANA:RNA decamer suffering from lattice translocation defects

Ovaere, M., Van Meervelt, L.

To be published.

Biological Assembly 1  

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Biological assembly 2 assigned by authors.

Biological Assembly 3  

Biological assembly 3 assigned by authors.

Biological Assembly 4  

Biological assembly 4 assigned by authors.

Biological Assembly 5  

Biological assembly 5 assigned by authors.

Biological Assembly 6  

Biological assembly 6 assigned by authors.

Biological Assembly 7  

Biological assembly 7 assigned by authors.

Biological Assembly 8  

Biological assembly 8 assigned by authors.

Biological Assembly 9  

Biological assembly 9 assigned by authors.

Biological Assembly 10  

Biological assembly 10 assigned by authors.

Biological Assembly 11  

Biological assembly 11 assigned by authors.

Biological Assembly 12  

Biological assembly 12 assigned by authors.

Biological Assembly 13  

Biological assembly 13 assigned by authors.

Biological Assembly 14  

Biological assembly 14 assigned by authors.

Biological Assembly 15  

Biological assembly 15 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 98.57 kDa 
• Atom Count: 6,885 
• Modeled Residue Count: 315 
• Deposited Residue Count: 315 
• Unique nucleic acid chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Length	Organism	Image
ANA	A, AA [auth 3], B [auth C], C [auth E], G, H [auth I], I [auth K], M, N [auth O], O [auth Q], S, T [auth U], U [auth W], Y, Z [auth 1]	11	N/A

Entity ID: 2
Molecule	Chains	Length	Organism	Image
RNA	BA [auth Z], CA [auth 2], D [auth B], DA [auth 4], E [auth D], F, J [auth H], K [auth J], L, P [auth N], Q [auth P], R, V [auth T], W [auth V], X	10	N/A

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.15 Å
• R-Value Free:  0.253 (Depositor), 0.250 (DCC) 
• R-Value Work:  0.221 (Depositor), 0.220 (DCC) 
• R-Value Observed: 0.223 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 34.22	α = 90
b = 34.21	β = 90
c = 170.92	γ = 90

Software Package:

Software Name	Purpose
SHELX	model building
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
SHELX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-11-30 
Deposition Author(s): Ovaere, M., Van Meervelt, L.

Revision History  

• Version 1.0: 2011-11-30
  Type: Initial release
  
• Version 1.1: 2018-12-12
  Changes: Advisory, Data collection, Derived calculations
• Version 1.2: 2024-02-21
  Changes: Data collection, Database references, Derived calculations, Refinement description