3OJE | pdb_00003oje

Crystal Structure of the Bacillus cereus Enoyl-Acyl Carrier Protein Reductase (Apo form)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.02 Å
  • R-Value Free: 
    0.271 (Depositor), 0.292 (DCC) 
  • R-Value Work: 
    0.269 (Depositor), 0.271 (DCC) 

wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history

Literature

Dimeric and tetrameric forms of enoyl-acyl carrier protein reductase from Bacillus cereus

Kim, S.J.Ha, B.H.Kim, K.H.Hong, S.K.Shin, K.J.Suh, S.W.Kim, E.E.

(2010) Biochem Biophys Res Commun 400: 517-522

  • DOI: https://doi.org/10.1016/j.bbrc.2010.08.083
  • Primary Citation Related Structures: 
    3OJE, 3OJF

  • PubMed Abstract: 

    Enoyl-[acyl carrier protein] reductase (ENR) is an essential enzyme in type II fatty-acid synthesis that catalyzes the last step in each elongation cycle. Thus far FabI, FabL and FabK have been reported to carry out the reaction, with FabI being the most characterized. Some bacteria have more than one ENR, and Bacillus cereus has two (FabI and FabL) reported. Here, we have determined the crystal structures of the later in the apo form and in the ternary complex with NADP(+) and an indole naphthyridinone inhibitor. The two structures are almost identical, except for the three stretches that are disordered in the apo form. The apo form exists as a homo-dimer in both crystal and solution, while the ternary complex forms a homo-tetramer. The three stretches disordered in the apo structure are important in the cofactor and the inhibitor binding as well as in tetramer formation.


  • Organizational Affiliation
    • Life Sciences Division, Korea Institute of Science and Technology, 39-1 Hawolkok-dong, Sungbuk-gu, Seoul 136-791, Republic of Korea.

Macromolecule Content 

  • Total Structure Weight: 27.77 kDa 
  • Atom Count: 1,706 
  • Modeled Residue Count: 222 
  • Deposited Residue Count: 256 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Enoyl-[acyl-carrier-protein] reductase (FabL) (NADPH)256Bacillus cereus ATCC 14579Mutation(s): 0 
Gene Names: BC_1216
EC: 1.3.1.9
UniProt
Find proteins for Q81GI3 (Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711))
Explore Q81GI3 
Go to UniProtKB:  Q81GI3
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ81GI3
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.02 Å
  • R-Value Free:  0.271 (Depositor), 0.292 (DCC) 
  • R-Value Work:  0.269 (Depositor), 0.271 (DCC) 
Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 83.148α = 90
b = 95.528β = 90
c = 67.109γ = 90
Software Package:
Software NamePurpose
HKL-2000data collection
CNSrefinement
HKL-2000data reduction
HKL-2000data scaling
CNSphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-09-08
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2024-03-20
    Changes: Data collection, Database references