3OCO | pdb_00003oco

The crystal structure of a Hemolysin-like protein containing CBS domain of Oenococcus oeni PSU

PDB DOI: https://doi.org/10.2210/pdb3OCO/pdb

Classification: structural genomics, unknown function
Organism(s): Oenococcus oeni PSU-1
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2010-08-10 Released: 2010-10-06
Deposition Author(s): Tan, K., Hatzos, C., Cobb, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free:
0.258 (Depositor), 0.249 (DCC)
R-Value Work:
0.196 (Depositor), 0.199 (DCC)
R-Value Observed:
0.200 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

The crystal structure of a Hemolysin-like protein containing CBS domain of Oenococcus oeni PSU

Tan, K., Hatzos, C., Cobb, G., Joachimiak, A.

To be published.

Macromolecule Content

Total Structure Weight: 35.72 kDa
Atom Count: 2,273
Modeled Residue Count: 272
Deposited Residue Count: 306
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hemolysin-like protein containing CBS domains	A, B	153	Oenococcus oeni PSU-1	Mutation(s): 0 Gene Names: OEOE_0137
UniProt
Find proteins for Q04HE1 (Oenococcus oeni (strain ATCC BAA-331 / PSU-1)) Explore Q04HE1 Go to UniProtKB: Q04HE1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q04HE1
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.258 (Depositor), 0.249 (DCC)
R-Value Work: 0.196 (Depositor), 0.199 (DCC)
R-Value Observed: 0.200 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 44.454	α = 90
b = 93.556	β = 102.93
c = 92.061	γ = 90

Software Package:

Software Name	Purpose
SBC-Collect	data collection
SHELXD	phasing
MLPHARE	phasing
DM	model building
RESOLVE	model building
HKL-3000	phasing
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
DM	phasing
RESOLVE	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2010-10-06

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2010-10-06
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2024-11-06
Changes: Data collection, Database references, Derived calculations, Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.