3NUI | pdb_00003nui

Crystal structure of omega-transferase from Vibrio Fluvialis JS17

PDB DOI: https://doi.org/10.2210/pdb3NUI/pdb

Classification: TRANSFERASE
Organism(s): Vibrio fluvialis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2010-07-07 Released: 2011-06-29
Deposition Author(s): Park, H.H., Jang, T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.242 (Depositor), 0.244 (DCC)
R-Value Work:
0.191 (Depositor), 0.194 (DCC)
R-Value Observed:
0.194 (Depositor)

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This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of the first omega-transaminase at 2.0A resolution

Park, H.H., Jang, T.

To be published.

Macromolecule Content

Total Structure Weight: 105.71 kDa
Atom Count: 7,096
Modeled Residue Count: 844
Deposited Residue Count: 956
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Pyruvate transaminase	A, B	478	Vibrio fluvialis	Mutation(s): 0
UniProt
Find proteins for F2XBU9 (Vibrio fluvialis) Explore F2XBU9 Go to UniProtKB: F2XBU9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	F2XBU9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.242 (Depositor), 0.244 (DCC)
R-Value Work: 0.191 (Depositor), 0.194 (DCC)
R-Value Observed: 0.194 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 78.075	α = 90
b = 95.03	β = 90
c = 123.079	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement

Structure Validation

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Entry History

Deposition Data

Released Date: 2011-06-29

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-06-29
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2018-02-07
Changes: Experimental preparation
Version 1.3: 2024-03-20
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.