3NKZ | pdb_00003nkz

The crystal structure of a flagella protein from Yersinia enterocolitica subsp. enterocolitica 8081

• PDB DOI: https://doi.org/10.2210/pdb3NKZ/pdb

• Classification: structural genomics, unknown function
• Organism(s): Yersinia enterocolitica subsp. enterocolitica 8081
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2010-06-21 Released: 2010-08-18 
• Deposition Author(s): Tan, K., Li, H., Feldmann, B., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.11 Å
• R-Value Free: 
  0.192 (Depositor), 0.188 (DCC) 
• R-Value Work: 
  0.159 (Depositor), 0.161 (DCC) 
• R-Value Observed: 
  0.158 (Depositor) 

Literature

The crystal structure of a flagella protein from Yersinia enterocolitica subsp. enterocolitica 8081

Tan, K., Li, H., Feldmann, B., Joachimiak, A.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 generated by PISA (software)

Biological Assembly 3  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 3 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 57.51 kDa 
• Atom Count: 3,241 
• Modeled Residue Count: 385 
• Deposited Residue Count: 492 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Flagellar protein fliT	A, B, C, D	123	Yersinia enterocolitica subsp. enterocolitica 8081	Mutation(s): 0  Gene Names: fliT, YE2526
UniProt
Find proteins for A1JSR8 (Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)) Explore A1JSR8  Go to UniProtKB:  A1JSR8

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PG4	F [auth A], I [auth C]	TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N
SO4	E [auth A], G [auth B], H [auth C], J [auth D]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B, C, D	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.11 Å
• R-Value Free:  0.192 (Depositor), 0.188 (DCC) 
• R-Value Work:  0.159 (Depositor), 0.161 (DCC) 
• R-Value Observed: 0.158 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 66.798	α = 90
b = 66.758	β = 90
c = 137.649	γ = 90

Software Package:

Software Name	Purpose
SBC-Collect	data collection
SHELXD	phasing
MLPHARE	phasing
DM	model building
RESOLVE	model building
HKL-3000	phasing
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
DM	phasing
RESOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-08-18 
Deposition Author(s): Tan, K., Li, H., Feldmann, B., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2010-08-18
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2024-11-20
  Changes: Data collection, Database references, Derived calculations, Structure summary