3LTU

5-SeMe-dU containing DNA 8mer


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.40 Å
  • R-Value Free: 0.200 
  • R-Value Work: 0.175 
  • R-Value Observed: 0.176 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.5 of the entry. See complete history


Literature

Synthesis of Pyrimidine Modified Seleno-DNA as a Novel Approach to Antisense Candidate

Fang, Z.Dantsu, Y.Chen, C.Zhang, W.Huang, Z.

(2023) ChemistrySelect 8


Macromolecules

Find similar nucleic acids by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains LengthOrganismImage
5'-D(*GP*(UMS)P*GP*(T5S)P*AP*CP*AP*C)-3'8synthetic construct
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.40 Å
  • R-Value Free: 0.200 
  • R-Value Work: 0.175 
  • R-Value Observed: 0.176 
  • Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 43.078α = 90
b = 43.078β = 90
c = 23.814γ = 90
Software Package:
Software NamePurpose
CBASSdata collection
PHASESphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-03-09
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Advisory, Version format compliance
  • Version 1.2: 2012-06-13
    Changes: Database references
  • Version 1.3: 2012-09-26
    Changes: Database references
  • Version 1.4: 2023-08-02
    Changes: Database references, Derived calculations, Source and taxonomy
  • Version 1.5: 2023-09-06
    Changes: Data collection, Refinement description