Download MendeleyThe crystal structure of a conserved functionally unknown protein from Colwellia psychrerythraea 34H.
Tan, K., Li, H., Bearden, J., Joachimiak, A.To be published.
3LO3 | pdb_00003lo3
3LO3 | pdb_00003lo3
The crystal structure of a conserved functionally unknown protein from Colwellia psychrerythraea 34H.
- PDB DOI: https://doi.org/10.2210/pdb3LO3/pdb
- Classification: structure genomics, unknown function
- Organism(s): Colwellia psychrerythraea 34H
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-02-03 Released: 2010-02-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.38 Å
- R-Value Free: 0.277 (Depositor), 0.266 (DCC)
- R-Value Work: 0.190 (Depositor), 0.187 (DCC)
- R-Value Observed: 0.195 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecule Content
- Total Structure Weight: 297.05 kDa
- Atom Count: 21,351
- Modeled Residue Count: 2,632
- Deposited Residue Count: 2,632
- Unique protein chains: 1
Macromolecules
Find similar proteins by:
| 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| uncharacterized conserved protein | 94 | Colwellia psychrerythraea 34H | Mutation(s): 0 Gene Names: CPS_1673 |  | |
UniProt | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q484V4 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Download:Ideal Coordinates CCD File | CA [auth C], DA [auth O], EA [auth P], FA [auth T] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A AA [auth a] B BA [auth b] C A, AA [auth a], B, BA [auth b], C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.38 Å
- R-Value Free: 0.277 (Depositor), 0.266 (DCC)
- R-Value Work: 0.190 (Depositor), 0.187 (DCC)
- R-Value Observed: 0.195 (Depositor)
Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 55.684 | α = 66.02 |
| b = 109.503 | β = 80.8 |
| c = 126.509 | γ = 79.42 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| SHELXD | phasing |
| MLPHARE | phasing |
| DM | model building |
| RESOLVE | model building |
| HKL-3000 | phasing |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| DM | phasing |
| RESOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2010-02-16 Deposition Author(s): Tan, K., Li, H., Bearden, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2010-02-16
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2012-02-22
Changes: Structure summary - Version 1.3: 2012-09-05
Changes: Derived calculations - Version 1.4: 2024-11-20
Changes: Data collection, Database references, Derived calculations, Structure summary
