3LLT | pdb_00003llt

Crystal structure of PF14_0431, kinase domain.

• PDB DOI: https://doi.org/10.2210/pdb3LLT/pdb

• Classification: TRANSFERASE
• Organism(s): Plasmodium falciparum 3D7
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2010-01-29 Released: 2010-08-04 
• Deposition Author(s): Wernimont, A.K., Tempel, W., Lin, Y.H., Loppnau, P., MacKenzie, F., Sullivan, H., Weadge, J., Kozieradzki, I., Cossar, D., Sinesterra, G., Vedadi, M., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Bochkarev, A., Hui, R., Qiu, W., Hutchinson, A., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free: 
  0.267 (Depositor), 0.266 (DCC) 
• R-Value Work: 
  0.223 (Depositor), 0.222 (DCC) 
• R-Value Observed: 
  0.225 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of PF14_0431, kinase domain.

Wernimont, A.K., Tempel, W., Lin, Y.H., Loppnau, P., MacKenzie, F., Sullivan, H., Weadge, J., Kozieradzki, I., Cossar, D., Sinesterra, G., Vedadi, M., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Bochkarev, A., Hui, R., Qiu, W., Hutchinson, A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 42.85 kDa 
• Atom Count: 2,867 
• Modeled Residue Count: 341 
• Deposited Residue Count: 360 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Serine/threonine kinase-1, PfLammer	A	360	Plasmodium falciparum 3D7	Mutation(s): 0  Gene Names: LAMMER, PF14_0431 EC: 2.7.11.1
UniProt
Find proteins for Q8IL19 (Plasmodium falciparum (isolate 3D7)) Explore Q8IL19  Go to UniProtKB:  Q8IL19

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ANP	D [auth A]	PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER C10 H17 N6 O12 P3 PVKSNHVPLWYQGJ-KQYNXXCUSA-N
SO4	B [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L
ACT	C [auth A]	ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free:  0.267 (Depositor), 0.266 (DCC) 
• R-Value Work:  0.223 (Depositor), 0.222 (DCC) 
• R-Value Observed: 0.225 (Depositor) 

Space Group: P 6₅

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 140.081	α = 90
b = 140.081	β = 90
c = 52.418	γ = 120

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
MxDC	data collection

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-08-04 
Deposition Author(s): Wernimont, A.K., Tempel, W., Lin, Y.H., Loppnau, P., MacKenzie, F., Sullivan, H., Weadge, J., Kozieradzki, I., Cossar, D., Sinesterra, G., Vedadi, M., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Bochkarev, A., Hui, R., Qiu, W., Hutchinson, A., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2010-08-04
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2017-11-01
  Changes: Refinement description
• Version 1.3: 2018-01-24
  Changes: Database references, Structure summary
• Version 1.4: 2023-09-06
  Changes: Data collection, Database references, Derived calculations, Refinement description