3LJN | pdb_00003ljn

Ankyrin repeat protein from Leishmania major

PDB DOI: https://doi.org/10.2210/pdb3LJN/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Leishmania major strain Friedlin
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2010-01-26 Released: 2010-02-09
Deposition Author(s): Holmes, M.A., Merritt, E.A., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free:
0.295 (Depositor), 0.304 (DCC)
R-Value Work:
0.229 (Depositor), 0.237 (DCC)

wwPDB Validation 3D Report Full Report

Validation slider image for 3LJN

This is version 1.3 of the entry. See complete history.

Literature

Ankyrin repeat protein from Leishmania major

Merritt, E.A., Holmes, M.A., Napuli, A., Kalyuzhniy, O., Van Voorhis, W.C., Buckner, F.S., Fan, E., Zucker, F., Verlinde, L.M.J., Hol, W.G.J.

To be published.

Macromolecule Content

Total Structure Weight: 41.12 kDa
Atom Count: 2,355
Modeled Residue Count: 304
Deposited Residue Count: 364
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
hypothetical protein	A	364	Leishmania major strain Friedlin	Mutation(s): 0 Gene Names: LmjF29.1100, LMJ_0751
UniProt
Find proteins for E9ADW8 (Leishmania major) Explore E9ADW8 Go to UniProtKB: E9ADW8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	E9ADW8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free: 0.295 (Depositor), 0.304 (DCC)
R-Value Work: 0.229 (Depositor), 0.237 (DCC)

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 57.293	α = 90
b = 85.656	β = 90
c = 76.814	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
SOLVE	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2010-02-09

Deposition Author(s):

Structural Genomics of Pathogenic Protozoa Consortium (SGPP)

Revision History (Full details and data files)

Version 1.0: 2010-02-09
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2017-11-01
Changes: Refinement description
Version 1.3: 2024-11-20
Changes: Data collection, Database references, Derived calculations, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.