3LFJ | pdb_00003lfj

Crystal structure of manxB from Thermoanaerobacter tengcongensis

• PDB DOI: https://doi.org/10.2210/pdb3LFJ/pdb

• Classification: TRANSFERASE
• Organism(s): Caldanaerobacter subterraneus subsp. tengcongensis MB4
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2010-01-17 Released: 2010-12-08 
• Deposition Author(s): Fu, T.M., Su, X.-D.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.56 Å
• R-Value Free: 
  0.208 (Depositor), 0.196 (DCC) 
• R-Value Work: 
  0.189 (Depositor), 0.179 (DCC) 
• R-Value Observed: 
  0.190 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of manxA and manxB from Thermoanaerobacter tengcongensis

Fu, T.M., Su, X.-D.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 42.33 kDa 
• Atom Count: 3,025 
• Modeled Residue Count: 333 
• Deposited Residue Count: 374 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB	A, B	187	Caldanaerobacter subterraneus subsp. tengcongensis MB4	Mutation(s): 0  Gene Names: manxB
UniProt
Find proteins for Q8RD54 (Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)) Explore Q8RD54  Go to UniProtKB:  Q8RD54

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.56 Å
• R-Value Free:  0.208 (Depositor), 0.196 (DCC) 
• R-Value Work:  0.189 (Depositor), 0.179 (DCC) 
• R-Value Observed: 0.190 (Depositor) 

Space Group: H 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 81.3	α = 90
b = 81.3	β = 90
c = 170.831	γ = 120

Software Package:

Software Name	Purpose
ADSC	data collection
MOLREP	phasing
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-12-08 
Deposition Author(s): Fu, T.M., Su, X.-D.

Revision History  

• Version 1.0: 2010-12-08
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2023-11-01
  Changes: Data collection, Database references, Refinement description