3L18 | pdb_00003l18

Ton1285, an Intracellular Protease from Thermococcus onnurineus NA1

PDB DOI: https://doi.org/10.2210/pdb3L18/pdb

Classification: HYDROLASE
Organism(s): Thermococcus onnurineus NA1
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2009-12-11 Released: 2010-12-15
Deposition Author(s): Jung, H.J., Cha, S.S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.78 Å
R-Value Free:
0.215 (Depositor), 0.202 (DCC)
R-Value Work:
0.160 (Depositor)
R-Value Observed:
0.163 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 3L18

This is version 1.2 of the entry. See complete history.

Literature

Structure Based Classification of the DJ-1 Superfamily: The Relationship between Homologous Structures and Various Functions

Jung, H.J., Cha, S.S.

To be published.

Macromolecule Content

Total Structure Weight: 37.78 kDa
Atom Count: 2,916
Modeled Residue Count: 335
Deposited Residue Count: 336
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Intracellular protease I	A, B	168	Thermococcus onnurineus NA1	Mutation(s): 0 Gene Names: intracellular protease I
UniProt
Find proteins for B6YXG0 (Thermococcus onnurineus (strain NA1)) Explore B6YXG0 Go to UniProtKB: B6YXG0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	B6YXG0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.78 Å
R-Value Free: 0.215 (Depositor), 0.202 (DCC)
R-Value Work: 0.160 (Depositor)
R-Value Observed: 0.163 (Depositor)

Space Group: P 6₃

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 87.114	α = 90
b = 87.114	β = 90
c = 80.119	γ = 120

Software Package:

Software Name	Purpose
HKL-2000	data collection
CCP4	model building
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling
CCP4	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2010-12-15

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2010-12-15
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2023-11-01
Changes: Data collection, Database references, Refinement description

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.