3K8V | pdb_00003k8v

Crysatl structure of a bacterial cell-surface flagellin N20C20

PDB DOI: https://doi.org/10.2210/pdb3K8V/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Sphingomonas sp. A1
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2009-10-15 Released: 2010-10-06
Deposition Author(s): Maruyama, Y., Momma, M., Hashimoto, W., Murata, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free:
0.268 (Depositor), 0.271 (DCC)
R-Value Work:
0.212 (Depositor), 0.212 (DCC)
R-Value Observed:
0.215 (Depositor)

Starting Model: experimental
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This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of N- and C-terminal regions of flagellin

Maruyama, Y., Momma, M., Mikami, B., Hashimoto, W., Murata, K.

To be published.

Macromolecule Content

Total Structure Weight: 73.22 kDa
Atom Count: 4,980
Modeled Residue Count: 643
Deposited Residue Count: 702
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Flagellin homolog	A, B	351	Sphingomonas sp. A1	Mutation(s): 0
UniProt
Find proteins for Q2PHB2 (Sphingomonas sp. A1) Explore Q2PHB2 Go to UniProtKB: Q2PHB2
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q2PHB2
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.268 (Depositor), 0.271 (DCC)
R-Value Work: 0.212 (Depositor), 0.212 (DCC)
R-Value Observed: 0.215 (Depositor)

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 52.676	α = 100.32
b = 52.619	β = 109.54
c = 64.834	γ = 111.62

Software Package:

Software Name	Purpose
MOLREP	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2010-10-06

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2010-10-06
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2023-11-01
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.