3JTT | pdb_00003jtt

Cystal structure of Rhesus macaque MHC class I:Mamu-A*02

PDB DOI: https://doi.org/10.2210/pdb3JTT/pdb

Classification: IMMUNE SYSTEM
Organism(s): Macaca mulatta, Simian immunodeficiency virus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2009-09-14 Released: 2010-09-15
Deposition Author(s): Dai, L., Feng, Y., Qi, J., Gao, G.F.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free:
0.255 (Depositor), 0.228 (DCC)
R-Value Work:
0.214 (Depositor)
R-Value Observed:
0.216 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of Rhesus macaque MHC class I:Mamu-A*02

Dai, L.

To be published.

Macromolecule Content

Total Structure Weight: 134.74 kDa
Atom Count: 9,756
Modeled Residue Count: 1,155
Deposited Residue Count: 1,155
Unique protein chains: 3

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
MHC class I Mamu-A*02	A, D, G	276	Macaca mulatta	Mutation(s): 0 Gene Names: Mamu
UniProt
Find proteins for Q30597 (Macaca mulatta) Explore Q30597 Go to UniProtKB: Q30597
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q30597
Sequence Annotations Expand
Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Beta-2-microglobulin	B, E, H	100	Macaca mulatta	Mutation(s): 0 Gene Names: B2M
UniProt
Find proteins for Q6V7J5 (Macaca mulatta) Explore Q6V7J5 Go to UniProtKB: Q6V7J5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q6V7J5
Sequence Annotations Expand
Reference Sequence

Find similar proteins by: Sequence | 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
peptide of Protein Nef	C, F, I	9	N/A	Mutation(s): 0
UniProt
Find proteins for Q9WH73 (Simian immunodeficiency virus) Explore Q9WH73 Go to UniProtKB: Q9WH73
Entity Groups
UniProt Group	Q9WH73
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.255 (Depositor), 0.228 (DCC)
R-Value Work: 0.214 (Depositor)
R-Value Observed: 0.216 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 128.993	α = 90
b = 129.007	β = 90
c = 129.026	γ = 90

Software Package:

Software Name	Purpose
CrystalClear	data collection
MOLREP	phasing
PHENIX	refinement
HKL-2000	data reduction
SCALEPACK	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2010-09-15

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2010-09-15
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2023-11-01
Changes: Data collection, Database references, Refinement description
Version 1.3: 2024-11-20
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.