3J0R | pdb_00003j0r

Model of a type III secretion system needle based on a 7 Angstrom resolution cryoEM map


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 7.70 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation 3D Report Full Report

Validation slider image for 3J0R

This is version 1.4 of the entry. See complete history

Literature

Structure of a type III secretion needle at 7-A resolution provides insights into its assembly and signaling mechanisms.

Fujii, T.Cheung, M.Blanco, A.Kato, T.Blocker, A.J.Namba, K.

(2012) Proc Natl Acad Sci U S A 109: 4461-4466

  • DOI: https://doi.org/10.1073/pnas.1116126109
  • Primary Citation Related Structures: 
    3J0R

  • PubMed Abstract: 

    Type III secretion systems of Gram-negative bacteria form injection devices that deliver effector proteins into eukaryotic cells during infection. They span both bacterial membranes and the extracellular space to connect with the host cell plasma membrane. Their extracellular portion is a needle-like, hollow tube that serves as a secretion conduit for effector proteins. The needle of Shigella flexneri is approximately 50-nm long and 7-nm thick and is made by the helical assembly of one protein, MxiH. We provide a 7-Å resolution 3D image reconstruction of the Shigella needle by electron cryomicroscopy, which resolves α-helices and a β-hairpin that has never been observed in the crystal and solution structures of needle proteins, including MxiH. An atomic model of the needle based on the 3D-density map, in comparison with that of the bacterial-flagellar filament, provides insights into how such a thin tubular structure is stably assembled by intricate intermolecular interactions. The map also illuminates how the needle-length control protein functions as a ruler within the central channel during export of MxiH for assembly at the distal end of the needle, and how the secretion-activation signal may be transduced through a conformational change of the needle upon host-cell contact.


  • Organizational Affiliation
    • Graduate School of Frontier Biosciences, Osaka University, 1-3 Yamadaoka, Suita, Osaka 565-0871, Japan.

Macromolecule Content 

  • Total Structure Weight: 9.14 kDa 
  • Atom Count: 644 
  • Modeled Residue Count: 82 
  • Deposited Residue Count: 82 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Protein mxiH82Shigella flexneriMutation(s): 0 
UniProt
Find proteins for P0A223 (Shigella flexneri)
Explore P0A223 
Go to UniProtKB:  P0A223
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0A223
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 7.70 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-02-29
    Type: Initial release
  • Version 1.1: 2012-03-14
    Changes: Database references
  • Version 1.2: 2012-03-21
    Changes: Other
  • Version 1.3: 2012-04-04
    Changes: Database references
  • Version 1.4: 2024-02-21
    Changes: Author supporting evidence, Data collection, Database references, Derived calculations