3IYO | pdb_00003iyo

Cryo-EM model of virion-sized HEV virion-sized capsid

• PDB DOI: https://doi.org/10.2210/pdb3IYO/pdb
• EM Map EMD-5173: EMDB EMDataResource

• Classification: VIRUS
• Organism(s): Paslahepevirus balayani
• Mutation(s): No 


• Deposited: 2010-03-19 Released: 2010-08-18 
• Deposition Author(s): Xing, L., Mayazaki, N., Li, T.C., Simons, M.N., Wall, J.S., Moore, M., Wang, C.Y., Takeda, N., Wakita, T., Miyamura, T., Cheng, R.H.

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 10.5 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental

Literature

Structural basis for the RNA-dependent assembly pathway of hepatitis E virion-sized particles

Xing, L., Mayazaki, N., Li, T.C., Simons, M.N., Wall, J.S., Moore, M., Wang, C.Y., Takeda, N., Wakita, T., Miyamura, T., Cheng, R.H.

(2010) J Biological Chem 

Biological Assembly 1  

Global Symmetry: Icosahedral - I  (Explore in 3D)
Global Stoichiometry: Homo 180-mer - A180 

Biological assembly 1 assigned by authors and generated by (software)

Macromolecule Content 

• Total Structure Weight: 213.1 kDa 
• Atom Count: 1,397 
• Modeled Residue Count: 1,397 
• Deposited Residue Count: 1,980 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Capsid protein	A, B, C [auth D]	660	Paslahepevirus balayani	Mutation(s): 0
UniProt
Find proteins for Q1AHV0 (Hepatitis E virus) Explore Q1AHV0  Go to UniProtKB:  Q1AHV0

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 10.5 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	P3DR

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-08-18 
Deposition Author(s): Xing, L., Mayazaki, N., Li, T.C., Simons, M.N., Wall, J.S., Moore, M., Wang, C.Y., Takeda, N., Wakita, T., Miyamura, T., Cheng, R.H.

Revision History  

• Version 1.0: 2010-08-18
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2018-07-18
  Changes: Data collection
• Version 1.3: 2024-02-21
  Changes: Data collection, Database references, Derived calculations, Refinement description