3IWH

Crystal Structure of Rhodanese-like Domain Protein from Staphylococcus aureus

• PDB DOI: https://doi.org/10.2210/pdb3IWH/pdb
• Entry: 3IWH supersedes: 3EME

• Classification: UNKNOWN FUNCTION
• Organism(s): Staphylococcus aureus subsp. aureus COL
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2009-09-02 Released: 2009-09-15 
• Deposition Author(s): Kim, Y., Chruszcz, M., Minor, W., Edwards, A., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.234 
• R-Value Work: 0.191 
• R-Value Observed: 0.193 

Literature

Crystal Structure of Rhodanese-like Domain Protein from Staphylococcus aureus

Kim, Y., Chruszcz, M., Minor, W., Edwards, A., Anderson, W.F., Joachimiak, A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 11.62 kDa 
• Atom Count: 1,039 
• Modelled Residue Count: 102 
• Deposited Residue Count: 103 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Rhodanese-like domain protein	A	103	Staphylococcus aureus subsp. aureus COL	Mutation(s): 0  Gene Names: SACOL1807
UniProt
Find proteins for A0A0H2WZ09 (Staphylococcus aureus (strain COL)) Explore A0A0H2WZ09  Go to UniProtKB:  A0A0H2WZ09

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
BME	B [auth A]	BETA-MERCAPTOETHANOL C2 H6 O S DGVVWUTYPXICAM-UHFFFAOYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.234 
• R-Value Work: 0.191 
• R-Value Observed: 0.193 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 41.412	α = 90
b = 51.995	β = 90
c = 58.971	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-3000	data collection
CNS	refinement
SBC-Collect	data collection
HKL-2000	data reduction
HKL-3000	data scaling
CNS	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2009-09-15 
Deposition Author(s): Kim, Y., Chruszcz, M., Minor, W., Edwards, A., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
• This entry supersedes: 3EME

Revision History  

• Version 1.0: 2009-09-15
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Source and taxonomy, Version format compliance
• Version 1.2: 2019-07-24
  Changes: Data collection, Derived calculations, Refinement description
• Version 1.3: 2022-04-13
  Changes: Database references, Derived calculations, Structure summary