3IS0 | pdb_00003is0

Crystal structure of functional region of UafA from Staphylococcus saprophyticus in the presence of cholesterol

• PDB DOI: https://doi.org/10.2210/pdb3IS0/pdb

• Classification: CELL ADHESION
• Organism(s): Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2009-08-24 Released: 2010-09-08 
• Deposition Author(s): Tanaka, Y., Shouji, Y., Matsuoka, E., Kuroda, M., Tanaka, I., Yao, M.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.75 Å
• R-Value Free: 
  0.212 (Depositor), 0.184 (DCC) 
• R-Value Work: 
  0.183 (Depositor), 0.184 (DCC) 
• R-Value Observed: 
  0.185 (Depositor) 

Starting Model: experimental

Literature

Crystal Structure of Functional Region of UafA from Staphylococcus saprophyticus

Matsuoka, E., Tanaka, Y., Kuroda, M., Shouji, Y., Ohta, T., Tanaka, I., Yao, M.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 47.75 kDa 
• Atom Count: 3,386 
• Modeled Residue Count: 392 
• Deposited Residue Count: 429 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uro-adherence factor A	A [auth X]	429	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292	Mutation(s): 0  Gene Names: uafA, SSP0135
UniProt
Find proteins for Q4A0V8 (Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)) Explore Q4A0V8  Go to UniProtKB:  Q4A0V8

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GOL	B [auth X]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.75 Å
• R-Value Free:  0.212 (Depositor), 0.184 (DCC) 
• R-Value Work:  0.183 (Depositor), 0.184 (DCC) 
• R-Value Observed: 0.185 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 100.224	α = 90
b = 110.616	β = 106.41
c = 49.773	γ = 90

Software Package:

Software Name	Purpose
MOLREP	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-09-08 
Deposition Author(s): Tanaka, Y., Shouji, Y., Matsuoka, E., Kuroda, M., Tanaka, I., Yao, M.

Revision History  

• Version 1.0: 2010-09-08
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2023-11-01
  Changes: Data collection, Database references, Derived calculations, Refinement description