3I63

Peroxide Bound Toluene 4-Monooxygenase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.09 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.156 
  • R-Value Observed: 0.159 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Crystallographic and catalytic studies of the peroxide-shunt reaction in a diiron hydroxylase.

Bailey, L.J.Fox, B.G.

(2009) Biochemistry 48: 8932-8939

  • DOI: https://doi.org/10.1021/bi901150a
  • Primary Citation of Related Structures:  
    3I5J, 3I63

  • PubMed Abstract: 

    A diiron hydroxylase reaction typically begins by combination of O2 with a diferrous center to form reactive intermediates capable of hydrocarbon hydroxylation. In this natural cycle, reducing equivalents are provided by specific interactions with electron transfer proteins. The biological process can be bypassed by combining H2O2 with a diferric center, i.e., peroxide-shunt catalysis. Here we show that toluene 4-monooxygenase has a peroxide-shunt reaction that is approximately 600-fold slower than catalysis driven by biological electron transfer. However, the toluene 4-monooxygenase hydroxylase-effector protein complex was stable in the presence of 300 mM H2O2, suggesting overall benign effects of the exogenous oxidant on active site structure and function. The X-ray structure of the toluene 4-monooxygenase hydroxylase-effector protein complex determined from crystals soaked in H2O2 revealed a bound diatomic molecule, assigned to a cis-mu-1,2-peroxo bridge. This peroxo species resides in an active site position adjacent to the hydrogen-bonding substructure established by effector protein binding and faces into the distal cavity where substrate must bind during regiospecific aromatic ring hydroxylation catalysis. These results provide a new structural benchmark for how activated intermediates may be formed and dispatched during diiron hydroxylase catalysis.


  • Organizational Affiliation

    Department of Biochemistry, College of Agricultural and Life Sciences, University of Wisconsin, Madison, Wisconsin 53706-1544, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Toluene-4-monooxygenase system protein A500Ectopseudomonas mendocinaMutation(s): 0 
Gene Names: tmoA
EC: 1.14.13 (PDB Primary Data), 1.14.13.236 (UniProt)
UniProt
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Go to UniProtKB:  Q00456
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UniProt GroupQ00456
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Toluene-4-monooxygenase system protein E327Ectopseudomonas mendocinaMutation(s): 0 
Gene Names: tmoE
EC: 1.14.13 (PDB Primary Data), 1.14.13.236 (UniProt)
UniProt
Find proteins for Q00460 (Pseudomonas mendocina)
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UniProt GroupQ00460
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Toluene-4-monooxygenase system protein B84Ectopseudomonas mendocinaMutation(s): 0 
Gene Names: tmoB
EC: 1.14.13 (PDB Primary Data), 1.14.13.236 (UniProt)
UniProt
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UniProt GroupQ00457
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Toluene-4-monooxygenase system protein DD [auth E]103Ectopseudomonas mendocinaMutation(s): 0 
Gene Names: tmoD
EC: 1.14.13
UniProt
Find proteins for Q00459 (Pseudomonas mendocina)
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Go to UniProtKB:  Q00459
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UniProt GroupQ00459
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.09 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.156 
  • R-Value Observed: 0.159 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 98.792α = 90
b = 116.929β = 90
c = 181.608γ = 90
Software Package:
Software NamePurpose
HKL-2000data collection
MOLREPphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-10-13
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Advisory, Version format compliance
  • Version 1.2: 2024-02-21
    Changes: Data collection, Database references, Derived calculations