3I42 | pdb_00003i42

Structure of response regulator receiver domain (CheY-like) from Methylobacillus flagellatus

PDB DOI: https://doi.org/10.2210/pdb3I42/pdb

Classification: Structural Genomics, Unknown function
Organism(s): Methylobacillus flagellatus KT
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2009-07-01 Released: 2009-07-28
Deposition Author(s): Ramagopal, U.A., Morano, C., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free:
0.240 (Depositor), 0.242 (DCC)
R-Value Work:
0.205 (Depositor)
R-Value Observed:
0.207 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 3I42

This is version 1.4 of the entry. See complete history.

Literature

Structure of response regulator receiver domain (CheY-like) from Methylobacillus flagellatus

Ramagopal, U.A., Morano, C., Burley, S.K., Almo, S.C.

To be published.

Macromolecule Content

Total Structure Weight: 14.15 kDa
Atom Count: 914
Modeled Residue Count: 118
Deposited Residue Count: 127
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Response regulator receiver domain protein (CheY-like)	A	127	Methylobacillus flagellatus KT	Mutation(s): 0 Gene Names: Mfla_1736
UniProt
Find proteins for Q1H0I3 (Methylobacillus flagellatus (strain ATCC 51484 / DSM 6875 / VKM B-1610 / KT)) Explore Q1H0I3 Go to UniProtKB: Q1H0I3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q1H0I3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free: 0.240 (Depositor), 0.242 (DCC)
R-Value Work: 0.205 (Depositor)
R-Value Observed: 0.207 (Depositor)

Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 81.998	α = 90
b = 81.998	β = 90
c = 33.291	γ = 120

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
CBASS	data collection
HKL-2000	data reduction
PHENIX	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2009-07-28

Deposition Author(s):

Ramagopal, U.A.

New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History (Full details and data files)

Version 1.0: 2009-07-28
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2017-11-01
Changes: Refinement description
Version 1.3: 2021-02-10
Changes: Database references, Structure summary
Version 1.4: 2024-02-21
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.