Structure of a putative short chain dehydrogenase from Pseudomonas syringae
Singer, A.U., Evdokimova, E., Kudritska, M., Edwards, A.M., Savchenko, A.To be published.
Experimental Data Snapshot
Starting Model: in silico
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Oxidoreductase, short chain dehydrogenase/reductase family | 247 | Pseudomonas syringae pv. tomato | Mutation(s): 0  Gene Names: PSPTO1740, PSPTO_1740 EC: 1.1.1 | ![]() | |
UniProt | |||||
Find proteins for Q885U1 (Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)) Explore Q885U1  Go to UniProtKB:  Q885U1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q885U1 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
EDO Query on EDO | C [auth A] E [auth A] F [auth A] G [auth A] H [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
ACT Query on ACT | D [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M | |||
CL Query on CL | K [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | |||
NA Query on NA | J [auth A], O [auth B], P [auth B], Q [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
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a = 47.253 | α = 90 |
b = 71.599 | β = 90 |
c = 131.086 | γ = 90 |
Software Name | Purpose |
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CrystalClear | data collection |
PHASER | phasing |
REFMAC | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |