3I1E | pdb_00003i1e

Crystal Structure of the PDZ domain of the SdrC-like Protein (Lin2157) from Listeria innocua, Northeast Structural Genomics Consortium Target LkR136C

PDB DOI: https://doi.org/10.2210/pdb3I1E/pdb

Classification: structural genomics, unknown function
Organism(s): Listeria innocua
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2009-06-26 Released: 2009-07-14
Deposition Author(s): Forouhar, F., Lew, S., Seetharaman, J., Sahdev, S., Xiao, R., Ciccosanti, C., Foote, E.L., Lee, D., Everett, J.K., Nair, R., Acton, T.B., Rost, B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.91 Å
R-Value Free:
0.291 (Depositor), 0.291 (DCC)
R-Value Work:
0.236 (Depositor), 0.254 (DCC)
R-Value Observed:
0.237 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Northeast Structural Genomics Consortium Target LkR136C

Forouhar, F., Lew, S., Seetharaman, J., Sahdev, S., Xiao, R., Ciccosanti, C., Foote, E.L., Lee, D., Everett, J.K., Nair, R., Acton, T.B., Rost, B., Montelione, G.T., Hunt, J.F., Tong, L.

To be published.

Macromolecule Content

Total Structure Weight: 19.89 kDa
Atom Count: 1,410
Modeled Residue Count: 178
Deposited Residue Count: 180
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lin2157 protein	A, B	90	Listeria innocua	Mutation(s): 0 Gene Names: lin2157 EC: 3.4.21.53
UniProt
Find proteins for Q929W6 (Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)) Explore Q929W6 Go to UniProtKB: Q929W6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q929W6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.91 Å
R-Value Free: 0.291 (Depositor), 0.291 (DCC)
R-Value Work: 0.236 (Depositor), 0.254 (DCC)
R-Value Observed: 0.237 (Depositor)

Space Group: P 3₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 43.68	α = 90
b = 43.68	β = 90
c = 76.102	γ = 120

Software Package:

Software Name	Purpose
CNS	refinement
PDB_EXTRACT	data extraction
ADSC	data collection
DENZO	data reduction
SCALEPACK	data scaling
COMO	phasing
REFMAC	refinement

Structure Validation

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Entry History

Deposition Data

Released Date: 2009-07-14

Deposition Author(s):

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2009-07-14
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2019-07-24
Changes: Data collection, Refinement description
Version 1.3: 2023-09-06
Changes: Data collection, Database references, Refinement description