Parsing the functional specificity of Siderocalin / Lipocalin 2 / NGAL for siderophores and related small-molecule ligands
Clifton, M.C., Rupert, P.B., Hoette, T.M., Raymond, K.N., Abergel, R.J., Strong, R.K.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Neutrophil gelatinase-associated lipocalin | 198 | Homo sapiens | Mutation(s): 2  Gene Names: HNL, LCN2, NGAL | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P80188 (Homo sapiens) Explore P80188  Go to UniProtKB:  P80188 | |||||
PHAROS:  P80188 GTEx:  ENSG00000148346  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P80188 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 7 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MCJ Query on MCJ | N [auth C] | N-[(2,3-dihydroxyphenyl)carbonyl]-O-[(2S)-2-{[(2,3-dihydroxyphenyl)carbonyl]amino}-3-({N-[(2,3-dihydroxyphenyl)carbonyl]-L-seryl}oxy)propanoyl]-D-serine C30 H29 N3 O16 NTWRWGRCGVKQNS-KSZLIROESA-N | |||
2DS Query on 2DS | G [auth A] | N-[(2,3-dihydroxyphenyl)carbonyl]-O-[(2R)-2-{[(2,3-dihydroxyphenyl)carbonyl]amino}-3-hydroxypropanoyl]-L-serine C20 H20 N2 O11 KLXJDVFEFZPIMN-NEPJUHHUSA-N | |||
3ET Query on 3ET | F [auth A] | O-[(2R)-2-amino-3-(D-seryloxy)propanoyl]-N-[(2,3-dihydroxyphenyl)carbonyl]-L-serine C16 H21 N3 O10 ZXSIADNPWRCRTI-BBBLOLIVSA-N | |||
DBH Query on DBH | I [auth B] | 2,3-DIHYDROXY-BENZOIC ACID C7 H6 O4 GLDQAMYCGOIJDV-UHFFFAOYSA-N | |||
SO4 Query on SO4 | D [auth A], J [auth C] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
GOL Query on GOL | L [auth C], M [auth C] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
FE Query on FE | E [auth A], H [auth B], K [auth C] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 114.253 | α = 90 |
b = 114.253 | β = 90 |
c = 117.95 | γ = 90 |
Software Name | Purpose |
---|---|
HKL-2000 | data collection |
REFMAC | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
REFMAC | phasing |