3H92 | pdb_00003h92

The crystal structure of one domain of the protein with unknown function from Methanocaldococcus jannaschii

• PDB DOI: https://doi.org/10.2210/pdb3H92/pdb

• Classification: structural genomics, unknown function
• Organism(s): Methanocaldococcus jannaschii
• Expression System: Escherichia coli BL21
• Mutation(s): No 


• Deposited: 2009-04-29 Released: 2009-05-12 
• Deposition Author(s): Zhang, R., Hatzos, C., Moy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free: 
  0.278 (Depositor), 0.283 (DCC) 
• R-Value Work: 
  0.202 (Depositor), 0.216 (DCC) 
• R-Value Observed: 
  0.206 (Depositor) 

Literature

The crystal structure of one domain of the protein with unknown function from Methanocaldococcus jannaschii

Zhang, R., Hatzos, C., Moy, S., Joachimiak, A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 11.5 kDa 
• Atom Count: 781 
• Modeled Residue Count: 86 
• Deposited Residue Count: 92 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized ATP-binding protein MJECL15	A	92	Methanocaldococcus jannaschii	Mutation(s): 0  Gene Names: GI:1522655, MJECL15
UniProt
Find proteins for Q60277 (Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)) Explore Q60277  Go to UniProtKB:  Q60277

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PG6	B [auth A]	1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE C12 H26 O6 DMDPGPKXQDIQQG-UHFFFAOYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free:  0.278 (Depositor), 0.283 (DCC) 
• R-Value Work:  0.202 (Depositor), 0.216 (DCC) 
• R-Value Observed: 0.206 (Depositor) 

Space Group: P 4₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.501	α = 90
b = 50.501	β = 90
c = 42.305	γ = 90

Software Package:

Software Name	Purpose
SBC-Collect	data collection
HKL-3000	phasing
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2009-05-12 
Deposition Author(s): Zhang, R., Hatzos, C., Moy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2009-05-12
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Advisory, Version format compliance
• Version 1.2: 2024-10-30
  Changes: Data collection, Database references, Derived calculations, Structure summary