3H5L

Crystal structure of a putative branched-chain amino acid ABC transporter from Silicibacter pomeroyi

• PDB DOI: https://doi.org/10.2210/pdb3H5L/pdb

• Classification: TRANSPORT PROTEIN
• Organism(s): Ruegeria pomeroyi
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2009-04-22 Released: 2009-05-05 
• Deposition Author(s): Bonanno, J.B., Freeman, J., Bain, K.T., Iizuka, M., Sampathkumar, P., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 0.185 
• R-Value Work: 0.159 
• R-Value Observed: 0.160 

Literature

Crystal structure of a putative branched-chain amino acid ABC transporter from Silicibacter pomeroyi

Bonanno, J.B., Freeman, J., Bain, K.T., Iizuka, M., Sampathkumar, P., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 89.97 kDa 
• Atom Count: 6,916 
• Modelled Residue Count: 799 
• Deposited Residue Count: 838 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
putative Branched-chain amino acid ABC transporter	A, B	419	Ruegeria pomeroyi	Mutation(s): 0  Gene Names: SPO2534
UniProt
Find proteins for Q5LQF6 (Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)) Explore Q5LQF6  Go to UniProtKB:  Q5LQF6

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 0.185 
• R-Value Work: 0.159 
• R-Value Observed: 0.160 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 62.882	α = 90
b = 121.628	β = 90
c = 122.876	γ = 90

Software Package:

Software Name	Purpose
SCALA	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
MAR345	data collection
MOSFLM	data reduction
SHELXCD	phasing
SHELXE	model building

Structure Validation

Entry History 

Deposition Data

• Released Date: 2009-05-05 
Deposition Author(s): Bonanno, J.B., Freeman, J., Bain, K.T., Iizuka, M., Sampathkumar, P., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History  

• Version 1.0: 2009-05-05
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2017-11-01
  Changes: Refinement description
• Version 1.3: 2018-11-21
  Changes: Data collection, Structure summary
• Version 1.4: 2021-02-10
  Changes: Database references, Structure summary
• Version 1.5: 2024-02-21
  Changes: Data collection, Database references