3H1N | pdb_00003h1n

Crystal structure of probable glutathione S-transferase from Bordetella bronchiseptica RB50

• PDB DOI: https://doi.org/10.2210/pdb3H1N/pdb

• Classification: TRANSFERASE
• Organism(s): Bordetella bronchiseptica RB50
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2009-04-13 Released: 2009-05-19 
• Deposition Author(s): Tan, K., Xu, X., Cui, H., Savchenko, A., Edwards, A.M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.83 Å
• R-Value Free: 
  0.223 (Depositor), 0.233 (DCC) 
• R-Value Work: 
  0.184 (Depositor), 0.199 (DCC) 
• R-Value Observed: 
  0.186 (Depositor) 

Literature

The crystal structure of probable glutathione S-transferase from Bordetella bronchiseptica RB50

Tan, K., Xu, X., Cui, H., Savchenko, A., Edwards, A.M., Joachimiak, A.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 59.61 kDa 
• Atom Count: 4,390 
• Modeled Residue Count: 482 
• Deposited Residue Count: 504 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable glutathione S-transferase	A, B	252	Bordetella bronchiseptica RB50	Mutation(s): 0  Gene Names: BB0443
UniProt
Find proteins for A0A0H3LPN1 (Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)) Explore A0A0H3LPN1  Go to UniProtKB:  A0A0H3LPN1

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
EDO	E [auth A], F [auth A]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N
CL	C [auth A], D [auth A], G [auth B], H [auth B], I [auth B], J [auth B]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.83 Å
• R-Value Free:  0.223 (Depositor), 0.233 (DCC) 
• R-Value Work:  0.184 (Depositor), 0.199 (DCC) 
• R-Value Observed: 0.186 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 64.949	α = 90
b = 87.115	β = 90
c = 91.372	γ = 90

Software Package:

Software Name	Purpose
SBC-Collect	data collection
SHELXD	phasing
MLPHARE	phasing
DM	model building
ARP/wARP	model building
HKL-3000	phasing
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling
DM	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2009-05-19 
Deposition Author(s): Tan, K., Xu, X., Cui, H., Savchenko, A., Edwards, A.M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2009-05-19
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Advisory, Version format compliance
• Version 1.2: 2024-11-27
  Changes: Data collection, Database references, Derived calculations, Structure summary