Download MendeleyCrystal structure of glyceraldehyde-3-phosphate dehydrogenase, type I from Burkholderia pseudomallei
Edwards, T.E.To be published.
3GNQ | pdb_00003gnq
3GNQ | pdb_00003gnq
Crystal structure of glyceraldehyde-3-phosphate dehydrogenase, type I from Burkholderia pseudomallei
- PDB DOI: https://doi.org/10.2210/pdb3GNQ/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Burkholderia pseudomallei 1710b
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-03-17 Released: 2009-03-24
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.263 (Depositor), 0.257 (DCC)
- R-Value Work: 0.204 (Depositor), 0.202 (DCC)
- R-Value Observed: 0.207 (Depositor)
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecule Content
- Total Structure Weight: 302.2 kDa
- Atom Count: 21,007
- Modeled Residue Count: 2,679
- Deposited Residue Count: 2,752
- Unique protein chains: 1
Macromolecules
Find similar proteins by:
| 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glyceraldehyde-3-phosphate dehydrogenase, type I | 344 | Burkholderia pseudomallei 1710b | Mutation(s): 0 Gene Names: gap, BURPS1710b_3466 EC: 1.2.1 |  | |
UniProt | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q3JNL6 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAD Download:Ideal Coordinates CCD File | I [auth B] J [auth C] K [auth D] L [auth E] M [auth F] | NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.263 (Depositor), 0.257 (DCC)
- R-Value Work: 0.204 (Depositor), 0.202 (DCC)
- R-Value Observed: 0.207 (Depositor)
Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 90.932 | α = 90 |
| b = 173.797 | β = 93.29 |
| c = 93.501 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| COMO | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2009-03-24 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2009-03-24
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description - Version 1.3: 2024-02-21
Changes: Data collection, Database references, Derived calculations
