3FZV | pdb_00003fzv

Crystal structure of PA01 protein, putative LysR family transcriptional regulator from Pseudomonas aeruginosa

PDB DOI: https://doi.org/10.2210/pdb3FZV/pdb

Classification: TRANSCRIPTION REGULATOR
Organism(s): Pseudomonas aeruginosa PAO1
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2009-01-26 Released: 2009-03-10
Deposition Author(s): Knapik, A.A., Tkaczuk, K.L., Chruszcz, M., Wang, S., Zimmerman, M.D., Cymborowski, M., Skarina, T., Kagan, O., Savchenko, A., Edwards, A.M., Joachimiak, A., Bujnicki, J.M., Minor, W., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.71 Å
R-Value Free:
0.279 (Depositor), 0.290 (DCC)
R-Value Work:
0.224 (Depositor), 0.231 (DCC)
R-Value Observed:
0.227 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of PA01 protein, putative LysR family transcriptional regulator from Pseudomonas aeruginosa

Knapik, A.A., Tkaczuk, K.L., Chruszcz, M., Wang, S., Zimmerman, M.D., Cymborowski, M., Skarina, T., Kagan, O., Savchenko, A., Edwards, A.M., Joachimiak, A., Bujnicki, J.M., Minor, W.

To be published.

Macromolecule Content

Total Structure Weight: 137.73 kDa
Atom Count: 8,306
Modeled Residue Count: 1,133
Deposited Residue Count: 1,224
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable transcriptional regulator	A, B, C, D	306	Pseudomonas aeruginosa PAO1	Mutation(s): 0 Gene Names: PA0218
UniProt
Find proteins for Q9I6S0 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore Q9I6S0 Go to UniProtKB: Q9I6S0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9I6S0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain F [auth D] SDF format, chain E [auth C] MOL2 format, chain F [auth D] MOL2 format, chain E [auth C] mmCIF format, chain F [auth D] mmCIF format, chain E [auth C]	E [auth C], F [auth D]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain E [auth C] Focus chain F [auth D] Interactions & Density Focus chain E [auth C] Focus chain F [auth D]

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.71 Å
R-Value Free: 0.279 (Depositor), 0.290 (DCC)
R-Value Work: 0.224 (Depositor), 0.231 (DCC)
R-Value Observed: 0.227 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 54.332	α = 90
b = 155.057	β = 92
c = 72.44	γ = 90

Software Package:

Software Name	Purpose
HKL-3000	data collection
HKL-3000	phasing
SHELXD	phasing
SHELXE	model building
RESOLVE	model building
Coot	model building
MLPHARE	phasing
DM	model building
ARP/wARP	model building
CCP4	model building
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling
RESOLVE	phasing
DM	phasing
CCP4	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2009-03-10

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2009-03-10
Type: Initial release
Version 1.1: 2011-07-13
Changes: Advisory, Refinement description, Version format compliance
Version 1.2: 2022-04-13
Changes: Database references, Derived calculations, Structure summary
Version 1.3: 2024-10-09
Changes: Data collection, Structure summary