3FYF | pdb_00003fyf

Crystal structure of uncharacterized protein bvu_3222 from bacteroides vulgatus

• PDB DOI: https://doi.org/10.2210/pdb3FYF/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Phocaeicola vulgatus ATCC 8482
• Mutation(s): No 


• Deposited: 2009-01-22 Released: 2009-02-10 
• Deposition Author(s): Patskovsky, Y., Bonanno, J.B., Ozyurt, S., Rutter, M., Chang, S., Groshong, C., Koss, J., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free: 
  0.277 (Depositor), 0.262 (DCC) 
• R-Value Work: 
  0.242 (Depositor), 0.232 (DCC) 
• R-Value Observed: 
  0.243 (Depositor) 

Literature

Crystal Structure of Protein Bvu-3222 from Bacteroides Vulgatus

Patskovsky, Y., Bonanno, J.B., Ozyurt, S., Rutter, M., Chang, S., Groshong, C., Koss, J., Sauder, J.M., Burley, S.K., Almo, S.C.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 39.01 kDa 
• Atom Count: 2,525 
• Modeled Residue Count: 315 
• Deposited Residue Count: 352 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PROTEIN BVU-3222	A, B	176	Phocaeicola vulgatus ATCC 8482	Mutation(s): 0  Gene Names: BVU-3222
UniProt
Find proteins for A6L587 (Phocaeicola vulgatus (strain ATCC 8482 / DSM 1447 / JCM 5826 / CCUG 4940 / NBRC 14291 / NCTC 11154)) Explore A6L587  Go to UniProtKB:  A6L587

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free:  0.277 (Depositor), 0.262 (DCC) 
• R-Value Work:  0.242 (Depositor), 0.232 (DCC) 
• R-Value Observed: 0.243 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 92.959	α = 90
b = 62.249	β = 94.37
c = 67.051	γ = 90

Software Package:

Software Name	Purpose
SHELX	model building
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
SHELX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2009-02-10 
Deposition Author(s): Patskovsky, Y., Bonanno, J.B., Ozyurt, S., Rutter, M., Chang, S., Groshong, C., Koss, J., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History  

• Version 1.0: 2009-02-10
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2016-03-09
  Changes: Structure summary
• Version 1.3: 2018-11-21
  Changes: Data collection, Structure summary
• Version 1.4: 2021-02-10
  Changes: Database references, Structure summary
• Version 1.5: 2024-02-21
  Changes: Data collection, Database references