3FWW | pdb_00003fww

The crystal structure of the bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase from Yersinia pestis CO92

PDB DOI: https://doi.org/10.2210/pdb3FWW/pdb

Classification: TRANSFERASE
Organism(s): Yersinia pestis Pestoides F
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2009-01-19 Released: 2009-03-24
Deposition Author(s): Zhang, R., Gu, M., Stam, J., Anderson, W., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.277 (Depositor), 0.290 (DCC)
R-Value Work:
0.214 (Depositor), 0.238 (DCC)
R-Value Observed:
0.217 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 3FWW

This is version 1.2 of the entry. See complete history.

Literature

The crystal structure of the bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase from Yersinia pestis CO92

Zhang, R., Gu, M., Anderson, W., Joachimiak, A.

To be published.

Macromolecule Content

Total Structure Weight: 48.9 kDa
Atom Count: 3,355
Modeled Residue Count: 445
Deposited Residue Count: 456
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Bifunctional protein glmU	A	456	Yersinia pestis Pestoides F	Mutation(s): 0 Gene Names: gi: 16124227, glmU, YPDSF_3916 EC: 2.7.7.23 (PDB Primary Data), 2.3.1.157 (PDB Primary Data)
UniProt
Find proteins for A4TSJ5 (Yersinia pestis (strain Pestoides F)) Explore A4TSJ5 Go to UniProtKB: A4TSJ5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A4TSJ5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.277 (Depositor), 0.290 (DCC)
R-Value Work: 0.214 (Depositor), 0.238 (DCC)
R-Value Observed: 0.217 (Depositor)

Space Group: P 6₃ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 88.318	α = 90
b = 88.318	β = 90
c = 251.931	γ = 120

Software Package:

Software Name	Purpose
SBC-Collect	data collection
MERLOT	phasing
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2009-03-24

Deposition Author(s):

Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History (Full details and data files)

Version 1.0: 2009-03-24
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2023-09-06
Changes: Data collection, Database references, Refinement description

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.